RnoEX6016659 @ rn6
Exon Skipping
Gene
ENSRNOG00000025498 | Crb2
Description
crumbs 2, cell polarity complex component [Source:RGD Symbol;Acc:1309368]
Coordinates
chr3:22038357-22049064:+
Coord C1 exon
chr3:22038357-22038453
Coord A exon
chr3:22044894-22045217
Coord C2 exon
chr3:22048869-22049064
Length
324 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTTCTTTTTTAACAGGGC
3' ss Score
10.37
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATGGCGCTGTTGGGGCCTGTGATCTGGGGCTTTAGACGAGATGTCTACCTCCTGTTGCTGCTACTGCTGCTGTTGCTGCCGCCCTGGGTCCCGGCTG
Seq A exon
GGCTGGTTCCTTCAGAGACCCCGAATGTCTGTGCCTCAGACCCATGTGCTCCAGGGACCAGGTGCCAGGCTACAGAAAGTGGTGGCTTTACCTGTGAGCCCTTAGAGCTTGGAGGCTGTGCTGCTCAACCGTGCCACCATGGTGCACTGTGTGTGCCCCAGGGCCCAGATCCTAACGGCTTCCGTTGCTACTGTGTGCCTGGATTCCAGGGACCCCACTGTGAGCTGGACATCGATGAGTGTGCCTCCCGGCCTTGCCACCATGGGGGCACCTGCCGAAATCTGGCAGATCACTACGAGTGCCACTGCCCCCTCGGCTATGCAG
Seq C2 exon
GCGTGACCTGTGAGGCGGAGGTGGACGAGTGCTCATCAGCGCCCTGCCTGCACGGAGGCTCGTGCCTGGACGGTGTGGGCTCCTACCGCTGTGTGTGCGCACCTGGATACGCCGGCGCGAGCTGTCAGCTGGACGTGGACGAGTGCCAGAGCCAGCCGTGCGAGCACGGTGGCGTGTGTCACGACCTGGTCAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025498-'0-1,'0-0,3-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=31.2),PF0000822=EGF=PU(90.3=25.7)
C2:
PF0000822=EGF=PD(6.5=3.0),PF0000822=EGF=WD(100=47.0),PF0000822=EGF=PU(53.1=25.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTGGGGCCTGTGATC
R:
GTTGACCAGGTCGTGACACAC
Band lengths:
286-610
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]