BtaEX6046057 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014391 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr11:94501988-94511892:+
Coord C1 exon
chr11:94501988-94502090
Coord A exon
chr11:94509063-94509386
Coord C2 exon
chr11:94511697-94511892
Length
324 bp
Sequences
Splice sites
3' ss Seq
CCAGTCTCCTTTCTCTGCAGGGA
3' ss Score
10.7
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
ATGGCGCTGGCCTGGCCTGGGACCCGGGACCCCAGGCCCTCGGCCCATCTCCTGCTGCTGCTGCTGCTGCTGCACAGGGCCCCAGTCCTCGCTCTACCGGCTG
Seq A exon
GGACGGTGCCTTCAGAGACCCCGGGTGCCTGCGCCTCAGACCCATGCGCTCCAGGGACCAAGTGCCAGGCTACAGAGAACGCTGGCTACAGCTGCGTGCCCCTGGAGCCCCGGGGCTGTGCCAGTCAGCCATGCCACCACGGCGCTCTGTGTGTGCCCCAGGGCCCAGGGCCCGATGACTTCCGCTGCTACTGTGTGCCGGGATTCCAGGGTCCACACTGTGAGCTGGACATCGATGAGTGTGCGTCCCGGCCCTGCCACCATGGGGCCACCTGCCGCAACCTGGCGGATCGTTACGAGTGCCACTGCCCGCTCGGCTATGAAG
Seq C2 exon
GCGTGACCTGCGAGACGGAGGTGGACGAGTGCGCCTCGGCGCCCTGCCTGCACGGGGGCTCGTGCCTGGACGGCGTGGGCTCATACCGCTGCGTGTGCGCGCCGGGCTACGGGGGCGCCAGCTGCCAGCTGGACCTGGACGAGTGCCAGAGCCAGCCGTGCGCACACGGGGGCGTGTGCCGCGACCTGGTCAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014391-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=31.2),PF0000822=EGF=PU(90.3=25.7)
C2:
PF0000822=EGF=PD(6.5=3.0),PF0000822=EGF=WD(100=47.0),PF0000822=EGF=PU(53.1=25.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATCTCCTGCTGCTGCT
R:
GTTGACCAGGTCGCGGCA
Band lengths:
254-578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]