DreEX0024160 @ danRer10
Exon Skipping
Gene
ENSDARG00000060106 | crb2a
Description
crumbs family member 2a [Source:ZFIN;Acc:ZDB-GENE-060612-1]
Coordinates
chr21:8392643-8420653:-
Coord C1 exon
chr21:8420405-8420653
Coord A exon
chr21:8393652-8394311
Coord C2 exon
chr21:8392643-8392838
Length
660 bp
Sequences
Splice sites
3' ss Seq
TCTGGTCTCTCATTCTACAGGAA
3' ss Score
10.9
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGAGGAACCTCATCTGATCCACACACACACACCCTCGCGCTTGCTGGAATTACAGGATCAAGCAGGAATTCGGACATCTGATGGTTTTATTTGATGTCTGATCCACTATGAAGTACTCCCAGAGAGGTTAAAGCTTAAAGGAAGTCGAGTTGGGAATATTTAGTTTGTTTCACGTCACCATGGAGATCAGGAAAGTGCATCTGAAGGGTCCCGGGACGGTTTTACTGACCATGATGATGTTCAAATGGG
Seq A exon
GAATATTCTGTTCCGGATCATCTGATTTGTGTGCATCTTCTCCATGTCAGAATGGGGCAACATGCGTGGATACAATGGACGACTATGTGTGCTTGTGTTCGCGGGAAGGAGTGCGGTACATGGGGAGGGACTGTGAGGAGCTGTACAATGCTTGTATGTTTGCTGAATGTGAAGGGTGTGAGAGTGAACTTGGCACAGACCACTACACCTGTCCAGAGGACAAAGACGAGTGCAAAAGTGGCCCATGTGTTGGTCCCCACTCTGAGTGTGTAAATGAGCAGAATGGCTACAAATGCCTGTGCCCACCTGGTTTCGGGGGAGAAGACTGCAGTCACCGAATCACAGACTGCATTGATGAACCCTGCCTCAACAATGGCACCTGTAGACGGATAGTGGATGGATTTGAATGTGCCTGTTCTGATGGATTTCGAGGCGAGACCTGTGAAGAAGACCTAGATGAGTGTGATTCACATCCCTGTCAGAATGGTGCAATCTGTTTGGATGGGGTCAACAAGTATCAGTGCTTTTGTGTACCTGGATACCAAGGACACAACTGTGAGATTGACATCAATGAGTGTGCATCCCGACCTTGTTGGAACAATGGGACCTGTATTAATGGGAAAGACAGATATCTGTGTGATTGCCTACTGGGATATACAG
Seq C2 exon
GTGTAAACTGTGAGTTGGAAATCGATGAATGCGAGTCAAATCCCTGTCAAAACGGAGCCACCTGTCATGACCTAGTGGGACTGTACACCTGTGACTGTGTGCAGGGATTTGAAGGCTCGGACTGTGAAATTAATATTGATGAATGTGAAAGTGGTCCTTGCCAGAATGGAGGACTTTGCCACGACCGCATTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060106_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=14.9),PF0764510=EGF_CA=WD(100=19.9),PF0000822=EGF=WD(100=14.0),PF0000822=EGF=WD(100=14.0),PF0000822=EGF=PU(90.3=12.7)
C2:
PF0000822=EGF=PD(6.5=3.0),PF0000822=EGF=WD(100=47.0),PF0000822=EGF=PU(53.1=25.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCACACACACACACCCTC
R:
GTCCGAGCCTTCAAATCCCTG
Band lengths:
356-1016
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]