HsaEX6062940 @ hg19
Exon Skipping
Gene
ENSG00000148204 | CRB2
Description
crumbs homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:18688]
Coordinates
chr9:126118449-126128391:+
Coord C1 exon
chr9:126118449-126118633
Coord A exon
chr9:126125144-126125467
Coord C2 exon
chr9:126128196-126128391
Length
324 bp
Sequences
Splice sites
3' ss Seq
CCAGTTTCTTCTTTCTACAGGGA
3' ss Score
9.73
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AGTGCTGGTTGGAGGGACGAGGGGGGTGCGGAGCCAGCCAGGCCGCCCTCCCGTTCTCACAGCAGCCGAGCAGAGCGCAGAGCGGGCTGCCATGGCGCTGGCCAGGCCTGGGACCCCGGACCCCCAGGCCCTGGCCTCTGTCCTGCTACTGCTGCTCTGGGCCCCTGCCCTTTCCCTCCTGGCTG
Seq A exon
GGACGGTGCCTTCAGAGCCCCCCAGTGCCTGTGCCTCAGACCCGTGCGCTCCAGGGACCGAGTGCCAGGCTACCGAGAGTGGTGGCTATACCTGTGGGCCCATGGAGCCCCGGGGCTGTGCCACCCAGCCATGCCACCACGGCGCTCTGTGTGTGCCCCAGGGTCCAGATCCCACCGGCTTCCGCTGCTACTGCGTGCCGGGTTTCCAGGGCCCACGCTGCGAGCTGGACATCGATGAGTGTGCATCCCGGCCGTGCCACCATGGGGCCACCTGCCGCAACCTGGCCGATCGCTACGAGTGCCATTGCCCCCTTGGCTATGCAG
Seq C2 exon
GCGTGACCTGCGAGATGGAGGTGGACGAGTGCGCCTCAGCGCCCTGCCTGCACGGGGGCTCGTGCCTGGACGGCGTGGGCTCCTTCCGCTGTGTGTGCGCGCCAGGCTACGGGGGCACCCGTTGCCAGCTGGACCTCGACGAGTGCCAGAGCCAGCCGTGCGCACATGGGGGCACGTGCCACGACCTGGTCAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148204-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=31.2),PF0000822=EGF=PU(90.3=25.7)
C2:
PF0000822=EGF=PD(6.5=3.0),PF0000822=EGF=WD(100=47.0),PF0000822=EGF=PU(53.1=25.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGTTGGAGGGACGAG
R:
CTCTGGCACTCGTCGAGGTC
Band lengths:
334-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)