BtaINT0043710 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014391 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr11:94521230-94523379:+
Coord C1 exon
chr11:94521230-94521347
Coord A exon
chr11:94521348-94523154
Coord C2 exon
chr11:94523155-94523379
Length
1807 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TCTTACTGCGTCTCTTGCAGAAA
3' ss Score
11
Exon sequences
Seq C1 exon
ATGTCAGATCCCCTGTGAAGCCAACCCCTGCTTGAATGGGGGCACCTGCCGGGCAGCTGATGGGGTGTACGAATGTGTCTGCAATGCCAGGTTCTCAGGCCAGTTCTGCGAAGTGGTG
Seq A exon
GTGAGTGATGGCCGACGGGGAGGGTGGCCTGTTTTGGACTTTGTGAGATGATGTTGTGGGGGGCGGGGGGCGTGTGTACAGGGCCTGTGGAGCTATTCCTGGGCCTGTCACAGGGTGGGGAGTAGCAGGCCAAGGAGACAGGGCCCTTCCACACCCCTGCACAGGAGGTCTGTTCATTCTGGGGGAGCCTGGGGACCGCCCCCTCCTCCCCCACCGACCATTCCTCTGGGGACCGCAGTGAATTCTGGGATTTACATTGGTGGCTATAGGAGCCTGTAATCTCTGGTGGTTTCTGAGCCAGGTTTGGAAAGTAGGAAGATTTGGGGAGCCCAGGACTCTAAGCCAGAGAAGGCTTGGCTGCCGTGAAGCCAGGCTCAGCTGAAGGGGGCGGGGGAAGGGGGGGAATAGATGGGGGCCAGCAGGCAGCCTGAGCATGGACCTCCCTCTGGCCCCCTCCCCTCCAAGAGGCAGAGCGGACTCTGCAGGCCCAGGCAGAAGTGAGCCAGAGTGGGCCTGGCAAGGGGGGTGGGCACGAAGCCTGGGGAGGCGCCTTGATCTCCACAGGCTTCTGGCGGGCCGGGTCATAAACCCCAATCCCCTCTGCTTCTGGGGAAATGCTTCCTTTCAAGTTGAACTTTACAGCCTCTGGCTCCCCCTCCCGCCCTCCTCCTAGGGAGGAAATGGCTTTACAGCTCCCCTAGGCTGGAGGATGGCCTGCCCTGGTTGCTTCGGGGCTGGGGTGAATTTTTCTCTACAGCCTTGGGCACCTTCTTCAGAGCTGGGGGCTGAGACTGGGACCCAGGCTGCAATGGGCTGAGAGGTCTCATGGGATGGAGGGAGGGCCGATGAATCTTGAGACCCTGGGCCTCTGCCCCCTCCCCAGAAATCTGTGATTCTGGGGCTCTAGAGCTCCAGGTCTGTAGAATCTTTTGATGGGGCATCCAGGTGTCTGTCTGGGCCCCCCACAGCCTGGTCTGTGTATCTCCTGGGGGTGGGGGCCGGCTGGGGGACTCTGAGCTCACCATCAACCAGGTCAGCCTGCTCCACCTCATGCCCTGCATGGGCCCCCTGGCCCTGAGATGCCTCCCACTTGGGGCTTAGGCATGGTCTCTGCAGACCTTCAAAAAACCAGAGCGCCCTTTGGGGTTGGGAAGGATCAAGTCCCATCACTTGTTTGGGTGTCTCTTGAGAGAGGTGGGGTGGCAGGGCTGGGCGCTGAGGCCCACCTTGGCCAGCTGAAGGAAGGACCTTTGGCTGGAATTCGAGACTGCAGGATGGTAGTGTGAGCTGGGCATGGCATGGCATGGTGTTGGGGGTGGACAGAGGGCAGTGCCAGTCCTGGTTCATCAGCCCCTAGTCGTGTGTCTGGGGGAATCTGGGCAGAGCCTCCATGTTCTCCTCTCATACTTACCGAGTGTCTACTGAGCAGGCTGTCCTCTCAGTGTTTTGGGGATACATGGGTGGACAAAATAAACCAAAGATTCCTGTCCTCAGGGGCGGCCTCGCTCTCACTTCATCAGATCACTGTGAGGTTTACGTGAAACCCCACGCTTGGGGTTGAGCTCCTACTAGGCATTCAGTAAATGTGTTTCTCTTCTACTGGAAGTCCTTGGTTGTACAGGAATCCCCTTGCAGTGGCTATGATAGGTGGCTCCTTTGCTCGCATACCCCTGGGGCCAGGTCTCTCACTCGCTCTCAGGGAAGCTTCCGCCCCATGATGCTTTTTTCCTCTCCTCTGCAGGGCCTGGGGTTGGGGTGGGGTCTCCCCAGCTCCACTGTCTCAGGCCTCTTACTGCGTCTCTTGCAG
Seq C2 exon
AAAGGCCTACCACTGCCGCTGCCGTTCCCGCTGCTGGAGGTAGCAGTGCCCGCGGCCTGCGCCTGCCTCCTCCTCCTCCTCTTGGGCCTCCTCTCAGGGATCCTGGCGGCCAGAAAGCGCCGCCAGTCAGAGGGCACCTACAGTCCGAGCCAGCAGGAGGTGGCCGGAGCCCGGCTGGAGATGGACAGCGTCCTCAAGGTGCCGCCCGAGGAGAGACTCATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014391:ENSBTAT00000043337:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(0.1=0.0),PF0000822=EGF=WD(100=77.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGATCCCCTGTGAAGCC
R:
CTAGATGAGTCTCTCCTCGGGC
Band lengths:
342-2149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development