HsaINT0041237 @ hg38
Intron Retention
Gene
ENSG00000148204 | CRB2
Description
crumbs 2, cell polarity complex component [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr9:123375217-123378753:+
Coord C1 exon
chr9:123375217-123375343
Coord A exon
chr9:123375344-123376837
Coord C2 exon
chr9:123376838-123378753
Length
1494 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CGGTGTCGTGTCTCTTGCAGAAG
3' ss Score
10.69
Exon sequences
Seq C1 exon
GTGTCAGGTCCCCACTCTCCCCTGTGAAGCCAACCCCTGCTTGAATGGGGGCACCTGCCGGGCAGCTGGAGGGGTGTCTGAATGTATCTGCAATGCCAGATTCTCCGGCCAGTTCTGTGAAGTGGCG
Seq A exon
GTGAGTGTTGTCAGGGGTGAGGGGCCGTGGACGTGGCCTGCTGGGCCCTTGGCGAGATGCTGCTGGGGAGAGAGCGCAGCACCATGGGGCTGTTCCTGGGCCACTCTGTCATGGGGTGGGGCAGTGAGAGGAGCCTCAGGTCCCTTCCACACCCCCCACACAAGAGGTATTTCCACTGCAGGGAGAGCTTTGGGGGCTGTCACCGTCTATTGACAAGAGCACAAAGCTCCTAGCTGGGTCAGCGGCTTCCTCAGAGTGCCCAGGGCAGTGGCAGTGAGGACAGATGGTCTCTGCCAATCCAACCAGGACTCAGGGCCATGTTGGTGTTCTGGGATTTAGGTTGGTGAATCCAGGAGACTCATCTCCAGGGGTTTCTGAGCCAGTGTCCTGAGTAGGAAGACACGGAGGGGCAGGGGGCCTGGGAGTCCGCACTGGAGCAGGCTCGGCCCGCTGTGCAGGCTGGCCCCAACCCCGGGTGGCTCAGCCCAGGAGGAGCCTGGACAGACGAAGGCAGCAGGCGCTGGAGCTGTGAACCTCCCCGCCACACCCCTTCCTGGGGCGGGGTGGGGGGAGTGGGTGCTGGCGAGGAGAGGCTTGGAAGGGAAGTCTGGGGAGCAGCCTTGATCTCTACAGGCTTCTGGCAGCCTGGGTCATAAACCACAAATCCCCTCCGCTTACGGGGAATGTTTCCTTTCAAGTTGAACTTTTACAGCCTCTGGCTTCCCTACCCAGCCACCTCCCCAGGGCAGGGGGAGGAAATGGCTTTACAGCTCCTCCCTCAAAATGTCCAACGGTGGAGGCTGGCAGGACCCTCTCAGGACCAGAGGAACTTTCCTGTCAAGTTTTAGGACCCAGGTCACAGTGGGCTGGGAAGCCTGGAGGTACAGAGGGAGGCTGGTGAGTCCCAGAGCCCATGCCTCTGGAATCCTCGCATCCTGGGACTACAGAGTCCCAGGCATGTAGAGGCTTTGATGGGGAATCCTGGGAGCCTGTGACTGGAGACACCAGGGAGGTTTGCTGGGCTCCCCGAAGCCTGGGCCGAGGCTCGCAGGGACAAGCTGTCATAACAGCCCCTCGGCCCCCCTGCCACCCTGCCCCCGCAGGTGGGCCCCAGTGGATTCTGACCTTGCTATTGTGGCAGGGGGCCGCTCAGCCTGCCCCTGCTCCTGCTCTGCCTCATGAGACCCTCGTAGGCTTCTGTGAAACCCATGCACCCTGCTTAGCTCCTGCCGGGTGTTCAATAAACGCCCATCTCTGTCCTTCTAGCCAGAACTCCTTTGTTGTATAGGCCTCCCCGAGCAGTGGCTGTGACAGGTGGTTTCCTGGCACTTGCCTGCATACCCCTGGGGCTGGGTCTTCACTGCTCCCAGGGCAGCCTGCTCCCAGCTCTGATTTTCTCTGAGTAGGTCCTTGTGCTGCGCTCTCTGCTCTCTGAGGGCCCCGGCGTCCTCCCCTTCTCTGCGGTCTTAGGCCTCGGTGTCGTGTCTCTTGCAG
Seq C2 exon
AAGGGCCTGCCCCTGCCGCTGCCATTCCCACTGCTGGAGGTGGCCGTACCTGCAGCCTGTGCCTGCCTCCTCCTCCTCCTCCTGGGCCTCCTTTCAGGGATCCTGGCAGCCCGAAAGCGCCGCCAGTCTGAGGGCACCTACAGCCCAAGCCAGCAGGAGGTGGCTGGGGCCCGGCTGGAGATGGACAGTGTCCTCAAGGTGCCACCGGAGGAGAGACTCATCTAGGCCAGCCTGGCTGCTGGCACCAGCACCTGGAGGTCCTGAATGGTTTCTACCTGGAGACCCAAGGAAGCTGCTTCCAGGGCTCGGGACATTGCTACGGAAGTGTCCCCTTGGCTGGCAGCCTCTGCCTCTGCCTCTGCCCCATCCTGGATGGAGGACGAGGGGAGCAACTCAGGGAAACAGAGGCCTAGAGAGGCTGCGGACTTCTCCATCCCACCCTCGGGGTTCCGCCTTGGCAGGTGTACGGCTGTGCGTGGGAGGGCACACGTGGGTTCACAGTGTGTTCAGGAGTGTGTGTATCTGGAGGAGTGTGTGTGTGAGTGTGTACCTGGGCCTGTGTTAGTCTGCAGATGCTAGTGTGAGTGTGTCCTGACATGGCTCCAGGGCGTGTCTGCCGTGTTTACTGTGTGTCTATGACTGTGATGGGTGTAGCTGATCCCAGGAGGTGGCGGCTGCGCCATGGGGTCAACCATTACAGTCCTAGGGCAGGGGCGGCCCAAGGCTGCATGTTCTCCAGGAGGCCAGGCCGGGGTTGCCCAGGCACCTCCTTCCCCGCCTCTGGGGGCTGCTCCTGCTGTGGAGGCAGCTGGGAAGTCAGGGAAGGCCACTAGCAGAGGCTGAGTGGGCTTCTGGCTCCTAGAACAAATGTCCCTTCAGGCAGGTCTGTCTGCCAGAAGCCAGAGCCAGTCATGCGAGGGAACCACAGACCCACCCGCCCCCTCAGCCGGAGCAGCCCGAGGGAGCAGAGGAGGGGCTGCCTGGAGCTTCCCACCCTGCTGTGGTCATTTGTCAAAGGGGGAAGGCACCCACTGCCTACCTCACAGGGCTGTTGTGAGGATCAGAGAGGACGACAGTGGGGAAAGAATCTGGAAGTCTTCAACTGCCGTCTGATGGGAAGGACCGTCTGGGTGTCCTTCTGGGATGAGGATGACAGAGCAACCCTTCTCCTGCCCTGAACCCCCCCAGCTCACCTGACCACCTCTGGTTCTCCAGCTCCGGTCCTTCCTAGCAGCCTGGTGAGCTCACTCCTTCCCCTGATGACTGGCTGCCTCTACACAGACTCGGCGAGAGGACTTGAAGGAAGCCCTCTGGGTTGTCTGCTGAGTACAGGGGCTCAGTGAACACTGGCGCTGCCTCTGAGTCGGGGCTGGGCCTGCAGAGGCCGACTCAGAGGAGACTCTGCTGCTTGCTCCCAGCCCCTTCCCCGGCGATGCCCATCACACTGTGACCTCCCATCCCTGAAGGGCACCTGCCTGAGGGCCTGGCCTCCTTCCAGCTTCATGGACCTGGAGATGTGCCCTTTCATCCTTCCTGCTTCCCAGGCCAGTAGATCCGTTTACACTTTTGGGTCGACAGTCAGCTTTTCCTTTTGGTTTTGGCGGGTCCCAGAGGCATGGGTGTCCAGTCCAATGTGGGGAGCCACGTGACAACGTGGGGGACTGGGACATGGGACTGGGAAGTCAGCAGACGCTGGGATAGAGAGGGCCCTGAACACCAGGCTCAGGGGCTTGCTTGGTCCTTATCCTGTAGGAGGTGGGACCACCTTTCCCTGAACTTTCTCTACAACCCTTGGGAGCGTGGGGAGGAGGCGGCTGGTTCCAGGGTCAGTTTACTAAGTTAGAGATTTGGAAAACCTGTGTCAGCTGTAACTCCTAGGATATTTTATGTGGAACCTAACATGCAGATGAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148204:ENST00000373631:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=72.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCTCCGGCCAGTTCTGTG
R:
CTTCCGTAGCAATGTCCCGAG
Band lengths:
354-1848
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development