GgaINT0126112 @ galGal3
Intron Retention
Gene
ENSGALG00000001169 | CRB2
Description
NA
Coordinates
chr17:9724015-9727497:+
Coord C1 exon
chr17:9724015-9724141
Coord A exon
chr17:9724142-9727247
Coord C2 exon
chr17:9727248-9727497
Length
3106 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGC
5' ss Score
7.35
3' ss Seq
CTCCATAATTTCTTTTACAGAAA
3' ss Score
8.61
Exon sequences
Seq C1 exon
TTGTCAAATTAATATAAACAAATGTGATCCAAACCCCTGCCAGAATGGAGGCACCTGTCAAGACTCTGAGAACAAATTCAAGTGTTTGTGCAGTGCCAGCTACACTGGAGAGCGCTGTGACATTAAC
Seq A exon
GTAAGCACTTCCTTCCTTTTGCTTTTGGAAGCTCCTCCTTGTTCTTCCAAACTTTGAATTATGAGAAGCATCAGCAGTAGGCTTAGTAGAATCCTTGGCTACCAGGGTATTAGTGAAACTGCCTGTGTGCTGTGTGTGTCTTGGCTAAAGCACACTGGTAAGCACACTTGGCGCCAAAGAAACTTGAAATGTGAAACAATTTTGTGGCACTGCTGTTGTGTGTTATTCTTCTACATTTAACTGCAACAAATATTTCTCAGTATCCATGTAGGCAGCAGATGGTTTACAGAGCTGTCTCTTGGACTTTCCTTAGATTTCTGCCTTGGACAATAATCAAGCTATTGCAGCTGGACCTACAAAAGTACTTTTATGCCTTATGCCCGTAGCGGTGGTACAAAAAGAAAATGAGATATTCTAGTTATATCTGTTTCAAGTAAGAACAATGAAGACAAATTTGATCCAAAGCTGGAAATGACCAGCAGCAAATGTAATACATGTGGAGTGCTAAGGCTGTTTTTGCCTTCAGTAGTGTAAATAAGGCAGTAAGAAGAGGCAAGAATATGGAGGACAAGTTGACAGTGAATAAAAACTTCCCCCATTTACATTAAGTAGGAAGCTATTGGATAATTAAAATGCACAGCTTGCAGGAAAACCAGGAGCGGTTGATCCAGCTGAGTTCACACGGTGTGATAGAGATGTGCAATGCACCAAACAATGAGATAGTGTCTCAAATGTTAGGAATATTTATTTATTTTTGCTCTGCCCTCTTCTGTTCACCACCTTGCTCTCCCTCCCACTGTTTCTTGGAGAATGGAATTTAAGCTGGCATTTTGTCTTGGATGAGTTTAGTTACAAAGTAGCTTCTCTCTCCAAAGATCATCTGGGTAGAAATTTGTTTGGAGATGACAGACAAAATGAAACTGAAAAAGTAGCATGCTTCTATCTGCTGCACGTACTTCTGCCTGGATGGGCAATTTCTGTGATGCTTTTTTTTTTCTGCATAAGCAAAGCATTGCTGTTTGAGACTGGAATCCTGTTATATCATACACTTGCTCTTTTTTGTAAAGCTGTTGCATGGGCAGATAGCTTGTCTGGTAACCTGGGAATGTACTAACCCGTACTGCATGGAATAGGCTGTGCACCAAGGTGGAGTCTGCTGCTGTTGCTGTTACTAAGGTCTGCATAATGCATGCACTGTAAGGTCACACCTGACGTTTCCAGTTTGCATGCGTAGACTCCTTCAGGTATCTGTCTCTTCTCTCCCTGGACTCTTCCTGTAGATGCTCTGGGTTCATTTCCATCACACCCACTGCTTTCTGCAGAACAGCCTTTTCCCCCTTTAAAGAACGGTGCCTGTGGTGGGGTCAGGGAGGACAGGCTATGGCTAACAGGCGTGTATGCTGTTAATGGCAGTTGTAGAAGCAAAAAGGCCTTAGCTGCATTCTCTTGCTCTTTCTCCTTCCAACAGCAGCAAATAAGAGCATGGAACAGGCACTAGGGTAGTTTCTGCTTAGTTTCTTCTAAGAAACTCCTGCAGCAATGGTAAAGTGCAACTAATCTGCATGCTTGTGCAAAACTGGGACTAATTTCTAGCGCATGCCTTGAGTTTCAGCATTCTCAGAATCAATTTAAACTTCACTCATTTGAAAATGGAAGACGGGCTTTCAGGTAGTCTGGGAATAGTCCTTCTATAGTGTAATGCTCTGTGACATGGGCATAGACTGGCATCCAAAAGCAGTAAATATTTGAGCTTGGATTCTTGGCAGATAGTATTTTTAACAAAGAGAAATATTTCCTGTTTTTAGGCTTATTGTTAAAGGTTTCTTTTAATGATAAAATTCCACATTTAAAAAAAATGCTTTGTTGTTGCCATTCCCTGTCACCTTAATTCCACCAATATCAAGAAAGGCATTTGACTGTTTCTCCACTCTGTACTTGGGCCTTTTATCTTCTCCATCTCCCATCCACATACTGACTTGACATCTCCCTTCCTGCTGCAAGCTGTCTTCAAGTCTGTTTCACTGTTTCACATTTTTACATAGTGTGGACATTAAAGTATGTCTTTCTAACTTAAAAGTTTTGAGCTCAACATTCAGAGTTTATATTATTTAAAATCTTTTGCACTCAAATGTCATAAAGGTCATCAAGGTGGCTGTGCCTGTCCTTGTTTTTGTAACTACTGACTGAATGCTCTACATTGCCATCAGGGGCATTACTGAACTTTTTTTAATAGCACTCCCCTGCTCATGGAAATTGTAGTGTTACTGAAAAATTCACGTTAGTCTGCTTTAACTTTATAGTTTTAATTTTTTGAACTGCTAGTTAGATCATACTGGTGACACCACCAGTCTGGTAACAGTAAAGAGGCTCCTTAAGATTCCCACTTTGATTTGAATCTTAAGGGGCTGTCCTGCTGTGAAAAACCATATAGAAAGAAGAGAAGAGGGTGTGTGATATTATTTGAAGAGTTTCAGCTAATCTAATGCTGTCTGAAGTGTTGGGCAGACTCTTTAACACACAGCCATTTGTTATACTTAGAACAGCAGTAGTTATGTCATTAGTAAGCTGTGTGCAATGGGCAGCTTTTCTTTGTAGCAATTGTGTAGCTCCAAGATTAGTCTCATAAACTGCAGTTAGTTTTGCTGTCCCCATGCCAGCCAGGATTTACTACATTAGGTAGCAAACTTTTCTTTGCTGTGATCATTCTGAACGTGTGCCCACTTGACTGACTGAACTGTTCCATCAGTAAATCTGTGTTTATAATTCTGTCCTAACTGTAACTGGCAGCTTTGGTGAAGTTGGAGAATATTACTGATGAGTGTCACCACTTAGGAATTAGAGGAAAATTTCAGAAGCTGTTGGTAATTTTCTTTATATCAGAAGTAACCCATTAATTTTTTATTTTTTATTTTTGCTGAGAGATTAAAGAATGAACATAAGCATTCTCTGCGCAGATGCCCTCAAGCCCTGTACCTGTCCTTTTCCATTAGGGCACAGATCATCTGCCTTTTTTCTTTTTTTCCCTCCTATTCTGACCATTTTGAGCTGTTGGACAGGTTATTGTAACCACTGGAGTTTCATTGTTTCTCCATAATTTCTTTTACAG
Seq C2 exon
AAAGGGACTCCAGGTGCTTTCTTCCCCTCCCCACTAATTGAAGTAGCTGTCCCTGTAGCCTGTGGCTCTTTACTGCTGCTCAGTATTGGTCTCATATTCATGATTCTCACTGCAAGGAAGAGGCGCCAATCAGAGGGAACCTACAGCCCAAGTCAGCAAGAAGTGGCAGGAGCTCGGCTGGAGATGGACAGTGTCCTAAAGGTGCCACCTGAAGAGCGGTTAATATAGACACTGCCCTGGCAAGGAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001169:ENSGALT00000038754:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.147
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(7.7=2.3),PF0000822=EGF=WD(100=72.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]