BtaINT0044092 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008102 | CRTAC1
Description
cartilage acidic protein 1 [Source:HGNC Symbol;Acc:HGNC:14882]
Coordinates
chr26:18899897-18900736:-
Coord C1 exon
chr26:18900636-18900736
Coord A exon
chr26:18900066-18900635
Coord C2 exon
chr26:18899897-18900065
Length
570 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
GTGTTCCTCCCCTGCTACAGGGC
3' ss Score
9.05
Exon sequences
Seq C1 exon
GAGGCGTGGTGACCGACTTCGATGGAGACGGGATGCTGGATCTCATCTTGTCCCACGGAGAGTCCATGGCTCAGCCGCTGTCCGTCTTCCGGGGGAATCAG
Seq A exon
GTGTGCCTGGACCTTGGGACCCACAGAGCCCTGCTTGGCATGCTCCCCTGGGCCTGGGATGAACGAGAACAGAGGAGCCCGGGGTGCTTGTTTGACCAGAGTGGCAGGAAATGGACATCCCAGGGAGGAAGCAGATGAGTTCCCAGACAGTCAGTAAGCCCCTGAGAAGGGCTGCTTCTCAGAGAAGTCTTCTGCCCCTCTCCTTCCTCTGGCACATCTCCAAAAACTGTTTTCAGGAAGATCCCCCTGGAGAAGGAAACGTCACCCCACTCCAGTATCCTCGCCTGGGAAATCCCATGGACAGAGGAGCCTGGCGGGCTACAGTCCACAGAGTCGCAAAGAGACAGACACGACTGAGTGACTAAACAATAAGACACAAAATTGGCTTTCCCTGCTCTTTCCAGAGCTGCTCCCGGCAAACTTCAATCAGTCGGTCTGCCTCATTCAGCCTCCCTGCCTGGCTCCCTCCTCCTCTCTTTCCTCTGCCCCTTCTCTTCTCCCCTCTTCCTCCTCTCTGATCCTTCCATCCACCCGGCTGATGCCCAGACCTGTGTTCCTCCCCTGCTACAG
Seq C2 exon
GGCTTCAGCAACAACTGGCTGAGGGTGGTGCCACGAACCCGGTTTGGGGCCTTCGCCAGGGGTGCCAAGGTCGTGCTCTACACCAAGAAGAGCGGGGCACACCTGAGGATCATTGACGGGGGCTCAGGCTACCTGTGCGAGATGGAGCCCGTGGCTCACTTTGGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008102:ENSBTAT00000010659:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183918=FG-GAP=FE(84.6=100)
A:
NA
C2:
PF0183918=FG-GAP=PD(2.6=1.8),PF075937=UnbV_ASPIC=PU(57.4=68.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCGTGGTGACCGACTT
R:
CCAAGCCAAAGTGAGCCACG
Band lengths:
270-840
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]