GgaINT1010511 @ galGal4
Intron Retention
Gene
ENSGALG00000017378 | CRTAC1
Description
cartilage acidic protein 1 [Source:RefSeq peptide;Acc:NP_001073680]
Coordinates
chr6:21828386-21828729:+
Coord C1 exon
chr6:21828386-21828486
Coord A exon
chr6:21828487-21828560
Coord C2 exon
chr6:21828561-21828729
Length
74 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCTCTTCCCTCTGCTGCAGGGT
3' ss Score
11.24
Exon sequences
Seq C1 exon
GGGGTGCGGTGACAGATTTTGATGGCGATGGAATGCTGGATCTGATCCTATCCCACGGCGAGTCCATGGCACAGCCACTCTCCATCTTCAAGAGCACCCAG
Seq A exon
GTGAGCAAAGGGGCTCCTCTAGGTGTCTCGGTCCCTGTGTCCCCCCAGCTCAGCCTCTCTTCCCTCTGCTGCAG
Seq C2 exon
GGTGTTGGCAACAACTGGCTGCGGGTCGTGCCACGCACCCGCTTTGGGGCCTTTGCGCGAGGGGCCAAGGTGGTGCTGTTCACACGGCGCAGCGGTGCCCACATGCGCATCATTGATGGTGGCTCAGGGTACCTGTGTGAGATGGAGCCCGTAGCACACTTTGGACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017378:ENSGALT00000028063:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183918=FG-GAP=FE(80.5=100)
A:
NA
C2:
PF0183918=FG-GAP=PD(7.3=5.3),PF075937=UnbV_ASPIC=PU(58.2=68.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGCCACTCTCCATCTTC
R:
GGGCTCCATCTCACACAGGTA
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]