HsaINT0041673 @ hg19
Intron Retention
Gene
ENSG00000095713 | CRTAC1
Description
cartilage acidic protein 1 [Source:HGNC Symbol;Acc:14882]
Coordinates
chr10:99655002-99655742:-
Coord C1 exon
chr10:99655642-99655742
Coord A exon
chr10:99655171-99655641
Coord C2 exon
chr10:99655002-99655170
Length
471 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
GCCTCTCACCCTCTCTGCAGGGC
3' ss Score
11.93
Exon sequences
Seq C1 exon
GGGGTGTGGTGACCGACTTCGACGGAGACGGGATGCTGGACCTCATCTTGTCCCATGGAGAGTCCATGGCTCAGCCGCTGTCCGTCTTCCGGGGCAATCAG
Seq A exon
GTGCGCTAAGACCTCAGGAGCCACAGATCCCAGCCCTGTGTGCTCTCGGGTACCTTGAGTTGGTGAGGGCAAGGTGCCGGGGTGCTGGCTTGGCCAGCATGGTGGGTAATGGAAGTCCCGGGCCCTGGAGGAGGGAAGTAAATTCCAGCAGCACCGGGAAGCTCAGGAAGGGCCGCCTTGGGAGAAGCCCTTGCCTCTCTGCCTTCCAGTATCATTTATCTGCCAAACACTGTGCCCTGAGTCCCTCGGCTTTTGTCTCCTCTGTCTGCAGTGCCTCTCCTTCATTCAGCCAATCTGTCTTCGCCTCATTCATTTTTCTTGTTTGGCTTCCTGTTTCTATCTTTTTCCTCTGCCTGCTTTCTTCTCTTCCTCCTTCTTCTCCCTCTCCCCCTCCCGTCCTCCCTGGCTCCCTGCTCTTCCCACCCACCATGCTGATGCCCACCGGGTGTCTGCCTCTCACCCTCTCTGCAG
Seq C2 exon
GGCTTCAACAACAACTGGCTGCGAGTGGTGCCACGCACCCGGTTTGGGGCCTTTGCCAGGGGAGCTAAGGTCGTGCTCTACACCAAGAAGAGTGGGGCCCACCTGAGGATCATCGACGGGGGCTCAGGCTACCTGTGTGAGATGGAGCCCGTGGCACACTTTGGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095713-CRTAC1:NM_018058:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF0183918=FG-GAP=FE(78.6=100)
A:
NA
C2:
PF0183918=FG-GAP=PD(9.5=7.0),PF075937=UnbV_ASPIC=PU(56.5=68.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTGTGGTGACCGACTTC
R:
CCAGGCCAAAGTGTGCCAC
Band lengths:
270-741
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)