BtaINT0044093 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008102 | CRTAC1
Description
cartilage acidic protein 1 [Source:HGNC Symbol;Acc:HGNC:14882]
Coordinates
chr26:18887441-18900065:-
Coord C1 exon
chr26:18899897-18900065
Coord A exon
chr26:18887587-18899896
Coord C2 exon
chr26:18887441-18887586
Length
12310 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTTCACCTTTCTTCCCACAGGGA
3' ss Score
13.37
Exon sequences
Seq C1 exon
GGCTTCAGCAACAACTGGCTGAGGGTGGTGCCACGAACCCGGTTTGGGGCCTTCGCCAGGGGTGCCAAGGTCGTGCTCTACACCAAGAAGAGCGGGGCACACCTGAGGATCATTGACGGGGGCTCAGGCTACCTGTGCGAGATGGAGCCCGTGGCTCACTTTGGCTTGG
Seq A exon
GTGAGTCAGGGCTCAGGGGTAAGGGGGTTTGGGGAGTGCCATGGGCTCTTGTCAGGGCAGTGGGATGCAGGGCTCTGCAGAGCCCACTGAAATGCAGGGCTCACAGCCTGAGCATCTTTCAGGTACCACCAGCTACTGGAGGCAACCCTGCTTTGAGATGAACCTGAACTCAGAAGGGAGGTTCTTTATGGCCCACTTCTTGCTGGGGTCCCCATCCCAGTGTCTCTGAGGAAGCAGTTCACCTTGGGGTCAGAGTATTTAATTCTCCATTTGTTCAAGGCTATGGCCTTGTTCTTCAAACAATGGCTACACCAAACCTGTCCACACCAGCTACTTCTCCAGATGCCTGGGTATTGGTTCAGTAATTAAAGTGTCTCAGCAAACCCTGGGTGCCTTCTCTTAGCTAGAAGGCTCAGGAGAAGCATGGCGGTGATGCCATCCCCAAGAAGGTAAAAATAGGTTCTTGACTGGGAGAGGGGGATTGAAAAAACGTCTACTTTTTTATGTATATATATATATATATGTATGTATGGGATCCCCAGGTGGCTCAGTGGTAAGGAATCTGCCTGCCAGTGCAAGAGACGCAGGAGACATGGGTTCAATCCCTGAGTCAGGAAGATCCCCTGAAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAAGAGCCTGGCGGGCTACAGTCCATGAGGTCCCAAAGAGTCAGACACAACTGAGCGACTGAGCGCTCACACATTATGTATGTATAAATATGTATAGGGTATCTGTGTGTATACACATATTAACATCAACAGATACACAGTATACCTGTGGTATTAATAAAATATCACTATACATCTATTAGCATAGCTAAAGTAACAAAAGTTACGAGGCCAAATGCTGGCAAGAATGTGGAGAAGCTGGATCTCTCATTCATTGCTGGTACATCTACTCTGGAAAATAGTTTGGCAGTTTCTTTTATGACAAAAAAAAAATCTATACTGTACAACTACTATGAAAGTCGCTCAGTCTGTAAGACCCAGCATTTGCACTGCTGGGCATTTATCCCAGGTAAATGAAAACTTATGTCCACATAAAAATCTATGCATGATTGTTCATAGTAACTTTGTCTCTAATAGCCCAAACTGGAAACAGCCTCAATGTCCATCAGTGGGTTAATGGGTCAACAAACTGCCATCCATTCACACCATGGAATATTGAAACGTGAAAGTCACTCAATCGTGTCCCCATGGACTTTACAGTCCATGGAATTCTCCAGGCCAGAATACTGGAGTGGGTAGCCACTCCCTTCTCCAGGGGATCGTCCCAACCCAAGGATCGAAGCCAGGTCTCCCATATTGCAGGTGGATTCTTTACCAGCTAAGCCACTAGGGAAGCTTACTCAGCAATAAAAAGGAATGAACCATTGATACATGCAGCAATTTGGATAGCTCTCATGTGTATTATGATGAGTGGCAGGGGTGGGGGGGTGAAGTCAGTCTCAGAAAGTCACATACTATTGATTCCATATATATAATATTCTCAAAGTGACAAAATTATAGAGATGGAAAATAGATCAGTAGTTGCTGGGGGTTAGAAGTGGTGAAAAGGGGAGGGGTGGGTATGACTTTAAAGGGAGAACCCCAAGGAGGTCTTCGTGTGATGGAGCAGTTCTGTGTTTTGATCGTGGTGGGAGCTGCATGATTCAACAGGTGATAAAAAACAAAGAACGGATACACACACACTGTGCCAATGTCAACTTCCTGGTTTTGATGTTGTATTATAGTTAGATAAGGTATATGTAACATAAGGTATATGGGGGCAACTGGGTGAAAGACATACCGAACCACTTTGTACTATCTTTTACAACTTCATATGAATCAATAATTCTTTCAAAATAAAGCATTTTTAAAGAAATGCACTACGGAAGGGAATTAGAGGGGAAAAGTCATAAAAGGCCTTCTTGGGGAGGAAGCACAGTAATGGAAAAAGTGTCGAGAAACACTATGGGGTGGGACATGGGGGCAACAGTGTCTTTACTAAAACACAACGATTAAGAAAACATTTAAGGAACTTCCCTTGGCAGTCCAGAGTTAAGAGTCCGTGCTTCCCCTGCAGGAGGTGCAGCTTCAATCCCTGGCTGAGGAACTAAGATCCCACATGCCATGCGGCATGGACAAAAATGGAAAATAAAATAAGTATTAAAAAAAAAAGAAGGGAAACCATTTGAGTCAAATATACCTAGGTTCAAAATCAGATACCCTCCCCCTTATGTTAGCACCTCATGATATTAACATAAAAAGAATAGGCAATACGGTCTCAAATTAACAGACATATATGTGTATGTTAATATTATATATACATCATATGGGCATAGAAAAAAACTAAAAGAAAATGCAAAAAGTGTGAACAGTGGTTCTCCTTGAGTGGCTGGATCCGTATGGTAATTCTTTCTTGTTCTAGGTGTGGTGACATTTTACTCTTATTATTTTACATCATCCTCGTGATTACCCTTTGATGTGGGCATGATTTATCCCCATTTTACAAATGGGAAACCTGAGGATCAGAACCATTAAACATTCCCCAGTCACATAAATGGCAGAGCTGAGATTCAAATCCAGACCTAACTGGGCAGGTGATTTTTATTTTATTCCATACTTTGTCTTCAGTATTTTGGGCTTCCCTGGTGGCTCAGACGGTAAGGAATCTGCCTGCAATACAGGAGACTCAGATTCAGTTCCTGGGTCAGGAAGATCCCCTGGAGAAGGGAATGGCTACCCACTCCATATCGTTGCATGGAGAATTCCATGGACAGAGGAGCCTGGCAGGCTACAACCCATGGGGTTGTAAAGAGTTGGACACGACTGAGTGATTAACACTTCACTTTCATATTTTGTGTATGTGTGTATGTGTTTTCCAATTTTTATAGGCAGCACATAATATTTATGTCATCTGAAAAAGAAGCATAAATATTTAGGGGACCCAGGGCCTGGTTATATGAGCATTTTCTCAGGCTATTTCACCCTGGGTGGGTCAGCCCGGAGTTGGAAATCTATCACTTTTAAGGCAGCCGTTCACTTTGCTGGCCCTGATGGTACAAGATGACTTTTATTTTATTTTTAAATATGTATCTATTTATTTATTTGGCTGCATCAGGTCTTACTTGCTACATGCAGGCTCGTTCCCCAACCAGGGATCAAACCTGGTCTCCCTACACAGAACACAGAGTTTCAGCCACCGGGCCACCAGGGAAGTCCTAGGTGACTTTTAAATACATAGTCCTCTCTTACGATATAGTAGTAGTCAACGTTAATCAAGTGCTTAGTGTATGCCTGACCCTGGTCTAGATGCTTTACGAAGATACCTTATTCCACTCTCGGCACCACAGGATGAACTAAGAATCATAACCCCATTTTACAGGTCCAGAAACTGAGACTGAGGTTAAGTCACACCTCCAGAAGATAGGGAGGACTGGATTTGGACCCCATCTCCTTGAACACCCCAGTCTGGCGTCTTAACCGCTATGACTTGACTGCCAGACTCCCATAGCTGTTCTGTGCGCAGCCAGCCAGGGTCCTGCTCTGCCCCTTTCTCACTGGACATCCACGACCCCTCAGTTACCAAATGACCCAAGTGAGCCCATCCACACCACGGTGACAGCCACGGTCTCACAGGTGGGATGTTTATCCAGACATCTGGCTTGGCTCTCAACCCACACCCCATTGTACAGATAAAGAAACTGAGGCTCACAAAGCAAATCAATGTTGAGGCCAGGACTGGGGCTGGGTTCTCCTTCCCCTCTCCCCTTGAGCTGCCTCTGCTATTTTGAGGTATGTCTTATGGGTCTTATTGGGCCTCTTCTCTGGCCAGTGTCAGTCCCTGCCAGAATGGACCTGCTTCTTCAGCTGGGAAGCCTTGGCAGGATCATTTGATGGTATCACAGGGTCCCAAGAGCCTCCATGACTCTTCCCAACTGTCTGCCTCCACAGCTCAGGGTTATGGAGGCTGCTCTTGCTTGGGACTCCCTGACAGCCCAGACTGCCAATCCTTGCTCTTCTACATTGCCATGGGGTTTGTTCTGGGTCTGAACTCTGGTTCAGACTGCTCCACAGGTCCCCTGCAGCCTCCCCTGCCAATGGATCCACTCCCAGAGAGGCGTAGAAGGAAGACTACACTTGGAGACCGACCCCAGTGGATCAGCTGTGGGCCTTGCAGTGAGACTCTCTAAGGCCGCTCAGCAGGCAGCAGGGCCAACAGCCAGGGACACAGCGAGGGGCAGGAGGCTCCACCCCTGCAGCTTCAAGAGCCCCACATCCAGAAGGATCTTCATGGATCCAGCACAGCACAGGCCTTCCTGACTGATAGAGGGGCCAGCAGTGGGGCAGGAGGAGAGGGAACCAGTGGGAAAGCCAGATGGGAAGGAAGGATTGCGGAAAGAGAGAAGAATAAGGAGACAGAAATGGGACGCAGGGGAAACCAAGAGATGTGGCCAAGAGACAGATGAAACAAGGAAATGCTCCCTGCCCTCCAGGCTCGCAGTCCCATGAGAGAGGCTGATGGACACAGGAGCTCTGGTCGCAAGCAGATTTGGGTGCTCCATCACACTGGCCCAGAAGCTGTGAGAGGACTGAGACAGGAGAAACCCACTCTGCTCTGAGCGAGGAAGTGGGCCTTGAACTAGGTCTAGAAGGATGGTAGGAATTTGTAAGGCGTGGATGAGGGCCAAAGCGGGGCATCCAGGGGCTGTCCTGGCTTGAACAAAGGCCAGAGGTGAGAGTGTTCACGATGTCCACAGGACAGGAAGGGTCTGGTGGGAGCAGAATCTGAAAAGGGAGGCCAGGGCCAATGTTTCAGGAGCTCCCAGAGCCACGCAGAGAGGGTGGGCAGAGTGGAGGGGGTCGCTGAGCCGGGAAAGCCACAGCCAGGCTCAGCTTTCAGTGGGAGGGGCGTTGCTGGGGAGGAAGGACCAGGAGGAGGAGCCCAGGAGCCTCTCCGGGCACAAGACTGGCACCTAGAGCCCTGCAGGGAGAGCCGCATTTGCAATTTTTTTAGAAAGCTTTAGTTTTGTTTTGTTTTTTTTTTTTCTGACTGCAAGAATAATGCATATTGATTATAGAAAAATTAGAAAATATAACACCATAAAAAAAGAAAGTAAAAATAACCTACAATCTCACCGCTACGTGTGGAATATTAAGCAAAAAGGAAATGTTCTCTCTTCACCCTCCCCCAGGGTCCTGTGACCCATTTAGTTGCTGCTTACTGAGCACCTACTATGTGCCAAACACTAACCGAAGGACGATCCTTGCTATGGGTGACCTTACATTCTAGTGGAACGAGGAGTCACATGTGATACCTCATAAACATAACAACTAGGTAAATATATAAAAGGTTAGAAGACGGTAAGCGCTATGAAAAAAGAAAATGCAGAACAGGGTAAAGGAATTAGGAACGCAGAAGGGAACAAGCCGGGAACGGTTTCAGTAGGTAGTCTGGGGCAGCCTCTTCCCAATTCCACACTTTTCGATAAGATTTTATTGCATGTAAAATACACAGGAGCACGTTTATAAATAAATATGCCTCGGAAGCTTTTTTAACGGAAATTATTAGACTCTCCCTATCATTCCCAAACTTGCTTTTTTCCCCCTCTCTCTTAACAGTAAGTATATCCTGGACATCATTCCAAGCCTGTGCATGTCTGCTTTGTTTTCCTTTAGTGCTGCACAGTATTTTGCTGTGTGGCTGCATTCATAATTTATTTAGCAAGGCCGCTGCTGACGGACAGTAGGGCGGTCTCCAGGCCGAAGTAGTTTGTTTTGTGGTGTTTGCAGTGAACAGGGGCAGGTCCAGAATGGGAATGCAGAAAGGGCTGTCCTGATGTCAGTAGGACTAGGAAGAAGATGTGGGGCCCCCCGAGGCTGTGCAGGAGGGCAGAGGGCTGCAGGAAGCCTCCTCCACCACCCATAATGCTCCTGCTCATCCCCTCTGACCCTGTTCCTTCCTGCCTCCAAAACTACCCCTGCCTCCTCCGGATTTTGCAGCAAAGTGTGGTGATCGGCTTGTCCATGGACACGTATGGGTGCACACATGTGCCCCTCAGCAGCCAGCCCCCTCCCTGGGGCACTTCTCTCCCCCACATACCTGGCTAGCTCCTCTCAGCTCCTGGGCCACTGGCTGGGGAACCAGTGCTTTCCCATGCTGTGGGCCTTTGCTTGGTCAGCACTGAGCTGTGCTTAGAGGACTCAGCTTCTCAGACCCTCACGTGCATGCCTTAGAGTCCAGACTGCATCACATCACACAGTAAAACTCAGGGACCTTGCTGCATTTCATGCTTCAAGGGGCAGGGGGTTCTCAGCGGGCCACTCTGTTGTGCAGTGAGCTCTCAGCTTCATCCTATAAAACCATCCCACGCACCCCTGCTCAGGGAGCCCCCTGGCCTCGTTCCACCATCCCCTACCCTGTCCTGCCCTTCCCCTGCTCCTCCCAATGCAGACGGCCAGCCAACCTCATAAACGAGCATTTCTGCTCACAGTCCCTGTTGAGTGCCCTGCTGGACTCGGGTTGCTCTGAACCCCAACATCTCAACCCCCGCATACCCACCCCATGTAGCCCACACCCACCCTGTGCAGCCCACACCCAGGCTCTCTGGTTCTGAGCTAGCAGAGAGCTAAGGCAGCTCTACCAAAGCCAATACGTGAAAACAAACGCCAATAATCTCCTTTCTCCGCCAGCCTCCCACTTGGGCTCACTCCCTGGGCCAACCCACCCCAGGTTTTGTTGGCGCCCCCATCCTCTACACATACACCCCTCCTTCCTTCAGCTGATTGTTCGCAAGTGACTCAGAGCTGCCTCCCAGCCGGCTGGTGCTCTTTTAGGAAAGGAAAATTCAGTGGCCCACATAAAAACGGCTTTAATAAAGTGCAAAAATATTCCACCAACTGTATTCCCACCATCTGTTTTGCTTGTGATTCTTCTGAAAAGCGCAATTCTCTGTGCCTCTTTGGCCTTTGTCCTTTAAAAGCTGCCGGAGGCGACTCCCTGCTGCTCTTAATGGGGCCTCCTCTGCTCCCAGACATACAGGCCCGGCAGTCTGGCCAACTTAAAGTCTGTCCTTGTGTAGTGTCTGGTGGCCGGGCCCCCTGGCTTCTGCAGCTGCGGGAAGACTTGAAATTTCTGGGGCAAAGGGAACGGCCCGGCCTGGGGGCAGGAGCCTGGGTTCCAGTCCGAACTCAAACACCTGCAGTTCCCTGCACCTTGCCAAGCCTCAGTGTCTCCATCGGGGGAGTGGGTATAAATTCTCCCTCGTGGAGTAGTTGAGAGGCTTCAATCAGTCACACCTTCGAGAGTTCCAAGTCCCTCCCCATCTCCTCTCCCACCCACCCCACTTAACGCACAAGCTCACACCCTGCTTCGCCCACTCTGATCTGCTCCCTGATCTTCAACACACATGTCCTTTTCATATCTCTATACCTCTGCCTGTTCTGTACCCTGTGCCTGGAACGTCCTTCCCTTGCCTTCCTTTCTGTGCCTCCCAAGCTCTTATTCCTCCTGCATCCTCCAACAAAATGACTTTTGACACCCGCCTCTCTCACCAAGTGGTACCCATACTATATGTGCACTTTCCCAGTTTATTTTAACATAATCACTGTGTTCATTGGCCCCACAGGGCTCAGCTCCTCCAGGATGGGTCCTAGGTCTGTCTCCTTCCTGCTGAATCCCAGCTCCCTGCATGATGCTTGGTCCATGGTGGTTTGGTCATGGGCGGGGAGGTGGGCAATAGAACAAGGGTTTCGAAGGTGCGGGCTTCAGGATCAGACATTCCCTCTCTGGGTAGCTGTGAGCAATTCCCTTCACCTCTCTGAGTCTCATCCCCTTCGACTCTAAGATGGAAATTATAAAACTAGTATTTTCTCAGGGGGCTGCTATGAGGATCCAGTGCCCTGACTGAGAATCACTGCCTGCAGTTTAGAGTGCATACCCTGTAGCATTACTGGCATCAAGGGGAAGCCCTTTGGGAACTGCAGGGTGCCCCCCATGTCTAAGAGATGATGGGGATGCTGAGGGTCAAAATTGGCTGGGGCAGCGCTCACATCCAAAAGACTGTCCTTCCTGGATAGGCTAGAGCTCCCATCTTACAGATGAGGAAACTGAGGCCCCCAAATAATCAGTAACAAAAGAGTGAGTCCTACTGAGACGTGCCCTCCCCATGGCTGATTTCTATCCTAGTCCTGCCAATCCCTGGGTCTGGAGGAAGAGAGGAAGCAGGATTCAGAGGCAGGATGTAAATTTGTGATTGTCTATGAATATTCGGCAGCTCTTGAGTTATTTGCAGCACTTCTGTCAGGCTGGAAAATGTATTTGTGTAGCTGCTCTGTTGGCTTAGGCGAGAAACATTTGTTCTTCTTTGTCTCCTTTTTTTTTTTTTTAATAGAAAAATGTTTACTTTTTACATCTGCCACTTAGTTTGGGCGCTGAACACCCTAAACATGCCAAATCTCTTGAACCTCAAGAGACTACTTCCAAACAGAAAAAGAGTGGGCAGTTGACATCCCCAATCCTATTTTCACCCCCTTCCCCAAAATAAATTATTGTGGTAGGAGGGAACAGGGAAGGAAGGGGTTATGAGAAATGTTTTCTGGCTTAATAGAGCCAATCCCAGAACCAGCAAACCCCCAGCCTGGAAGGGGAGAACCTCCATGGGGAGAGAAGCTGCATCCTGTCTGGGGGCTCTGGGTCATGTGGGGGTCTCTGCTCAGGGGACCTCTATCTGGTGCTGCTGCCCCATTGCAGGCACAGGGGCAGGGGGCTGCTCACCTTTGACACTTCCGGAGGGTGGTGGCTGGTCCCTGCCCTTATTAATTCATGATGGCCAGAGGAGAGGCTTCTCTGGAGGCCTTGGGTTGGAGGGAGCAGAAGAGAAGCAAGCCCAGGGAGGCTCAGAAAGTAGAAAGGGTGGCTCTCAAGATGCACCTTTCTCTGGAAGCTCCAGACTGACGCACTGGGACTTGGGGAGAAAGCTGCAGTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCATGCAGCTTCTCTCCCCATGGAGACTCACCCCTTCCAGGCCCATGGCTTACTGGTTCTGAGGTTGGCTCTATTAAACCAGCAAACATTTCTCATAACCCCCTTCTCCCCCTGCTCCCTTTTCTAAAATACAGGAACCCTGTTCATACGCAAAATGTTTCACAGACCACCCTCCGCCCCCATCGCAGCGATCATTGTAGAAAATCCATTGGTGGACAGTAATGACCAAAAGCTGCTATAAATTCGATGGCACTTTTCAGTTTCCCTTGTTTTGTGACAGTCTCTATACGCATTGAGGAGAACGTGGCACGCAAATGTGGGTGACTTTATTCTCAGCCCTCGACTGATGCTTGGGGGAGTGTGCAAGTCTGTGGAGCCCCGAGCACCAAGCCCTTGTCTAGGCAGCCCAGGTGGGTGTCAACGAGGGGCTGCAGCATCCCTCCCACCTGTACTGAGCGCTGCCCTCTTTCCCAGGTGACTGACTGGAGAAAGGCTTCTCCCAGCAGGTGAGGCCCAGCTCCCGCTCTTCTCACCCCAATCCATCACCATTAGCCTGACCTTGTCTCAGTGACAGGCCTGTTGCTTTAAGCAGGAAGCTGGGGCCGGCTGTGACGACGCCTAAACACCTGATAAATCTTTCCAACCTGCTTTCTGCCAGTGATGTAACACGTTGCTTTAAGGATGTGTGCAGATGGATTCACAATGAATATTCCCTGAGTTTCACCACCATTATTTTCTGTAAACATCTCGGCTTTGTTGTTGTCGTTCAGCTGCTAAGCTGTGTCCGATTCTTTGTGACCCCATGCTGCAGCACAAGAGGGCTCCCCTGTCCTTCACTATCTCCTGGAGTTGGCTCAGATTCATGTCCATTGAATCGATGATGCTATCTATCCATCTCATCCTCTGCCACCCTCTTCTCCTACCTTCAATCTTTCCCAGCATCAGGGTCTTTTCCCAGTGAGCTGGTTCTTCATATCAGGTGGCCAAAGAATTGGAACTTCAGCTTCAGCATCAGTCCTTCCAATGAATATTCAGGGTTGATTTCCTTTAGGATTGACTGGTTTGATCTCCTTGTAGTCCAAGGGACTGTCAAGAGTCTTCTCCAACACCACAATTTGAAAGCATCAATTCTTCAGTGCTCGGCATCCTCTATGGTCCAGCTGTCACATCCAGACATGACTACTGCAAAAACCATAGCTTTTACTGTGTAGACCTTTGTCTGCAGGGTGCTGTCTCTGCTTTTTAATACACTTTCTAGGTTTGTCATAGCTTTTCTTCCAAGGAGCAAGTGTCTTTTAATGTCATGGCTGCAGTCACTGTCCGCAGTGATTTTGGAGCCCAAAAAGAGAAAAATCTGTCACTGCTTCCATTTTTTCCCCTGCTATTTGCCATGAAGTGATGGGTCTGGATGCCGTGATCTTAGTTTTCTGAATGTTGGGTTTTAAGCCACTTTTTTCACTCTCCTCTTTTGCCCTCTTCAAAAGACTCTTTAGTTCCTCTTCACTTTCTGCCATTAGAGTGACATCATCTGCATATTTGAGGTTATTGATATTTCTCCCGGAAATCTTGATTCCAGCTTGTGATTCATCCAGCCCAGCATTTCATATGAGGTACTCTGCATATAAGTTAGATAAGCAGGGTGACAATATACAGCATTGCCATATTCCTTTCCCAATTTTTAACCAGTCAGCTGTTCCATGTCCAGTTCTCACTGTTGCTTCTCAGATTTGTCTTTCTCCTGAGCTTTTGTCACCTCAGCTTTTATATGGAGCTCAACTCAAATACCTTATCCCCAAGAACCTGTCCCTCATCACCTTGACTAGACAAGGCCCCCAGTAACTCTTACTTCCTCTTTATCTCATCACCCGATTTTTGTTTTCTTCACAGAGCTTGTCAATATCTGGCATTGTTTATCGGTTCATCTGTGTGCCTATCTATCCCCACTAGAGTAGAAGCTCCCTGAAAACAGGGACTTTCCCAGTGACGGCCCCTTGCAGACTTTAGCTATCAGTTTAGATACAAATCAATGGAATACACCCAATATTAAAAAGCAAATCAGCTGTAAAGCTGATCATTGTCCCCAGGTCTCCCAGATGCCCCACCCCCACTCTTTCTTTCCCAACATGCTAGGTAAATGGTACAGCCAAGATTTGAACCCAGGACTCCAAAGTCAATCTGTTTACCACCAGGTTTAACCCTCTTCCCCAAAACAGCCTCCTGCCCATTGGCCTAGCCACTAGGATGTAAGTTCTAGAACTGCGCTGTCTGGTATGGTAGCCACTAGGTGAGTGGTTAAATAATTCTATTTTAAATAGAATTTAAAATCCAGTCCCTTATCACGCCAGTGCCACACCGGAGCTCAGCATACACCTATGGCTAGCCGCTACCGCAGCTGACAGATAGATAGAGAACATCACCGTTACCACGCAAGTTCTCTTGGACGGCGTTGTCCTAAAGGAGCAGGATCTTGTCGGCCTTGTTCACTATTTCCCCAGCACTTAGAACAGTATTCAGATCATGTTTTTTATCAGATGAACGAATGAATGATGACACCCTTGAAGAGAATCCCTCCCCAGTCCCCACTCTCCTCTGCAGCTGATCATTTCACCTTTCTTCCCACAG
Seq C2 exon
GGAAGGATGAAGCCAGCAGCGTGGAGGTGACATGGCCAGATGGCAAGATGGCCAGCAGGAACGTGGCCAGCTCGGAGATGAACTCAGTGCTGGAGATTCCCTATCCCCGGGATGATGACAGACCTCAGGACCCAGCCAGCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008102:ENSBTAT00000010659:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.592
Domain overlap (PFAM):
C1:
PF0183918=FG-GAP=PD(2.6=1.8),PF075937=UnbV_ASPIC=PU(57.4=68.4)
A:
NA
C2:
PF075937=UnbV_ASPIC=PD(41.2=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]