GgaINT1010512 @ galGal4
Intron Retention
Gene
ENSGALG00000017378 | CRTAC1
Description
cartilage acidic protein 1 [Source:RefSeq peptide;Acc:NP_001073680]
Coordinates
chr6:21828561-21828955:+
Coord C1 exon
chr6:21828561-21828729
Coord A exon
chr6:21828730-21828809
Coord C2 exon
chr6:21828810-21828955
Length
80 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
GACAGGCTGCCTGCCCGCAGGGC
3' ss Score
8.21
Exon sequences
Seq C1 exon
GGTGTTGGCAACAACTGGCTGCGGGTCGTGCCACGCACCCGCTTTGGGGCCTTTGCGCGAGGGGCCAAGGTGGTGCTGTTCACACGGCGCAGCGGTGCCCACATGCGCATCATTGATGGTGGCTCAGGGTACCTGTGTGAGATGGAGCCCGTAGCACACTTTGGACTGG
Seq A exon
GTAAGCCCTGGGGTGGGGGCAAGAGGCTGCTAGCCCCCCAGCCCTCCCCCAGCACCCAGTGACAGGCTGCCTGCCCGCAG
Seq C2 exon
GGCGTGATGAAGCCAGCAGCCTGGAGGTGACGTGGCCCGACGGCCGCGTCCTGGTGCGAGCGGTGGCCAGCAGCGAGACCAACTCCGTCCTGGAGGTCCCCTATCCCCGAGACACAGAGAAGCCACCAGCGCCCACCCTGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017378:ENSGALT00000028063:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.122
Domain overlap (PFAM):
C1:
PF0183918=FG-GAP=PD(7.3=5.3),PF075937=UnbV_ASPIC=PU(58.2=68.4)
A:
NA
C2:
PF075937=UnbV_ASPIC=PD(40.3=55.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATCATTGATGGTGGCTCA
R:
CTCTGTGTCTCGGGGATAGGG
Band lengths:
183-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]