HsaINT0041674 @ hg19
Intron Retention
Gene
ENSG00000095713 | CRTAC1
Description
cartilage acidic protein 1 [Source:HGNC Symbol;Acc:14882]
Coordinates
chr10:99643963-99655170:-
Coord C1 exon
chr10:99655002-99655170
Coord A exon
chr10:99644109-99655001
Coord C2 exon
chr10:99643963-99644108
Length
10893 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TCTCTCCTTCTGCCCCTCAGGGA
3' ss Score
10.47
Exon sequences
Seq C1 exon
GGCTTCAACAACAACTGGCTGCGAGTGGTGCCACGCACCCGGTTTGGGGCCTTTGCCAGGGGAGCTAAGGTCGTGCTCTACACCAAGAAGAGTGGGGCCCACCTGAGGATCATCGACGGGGGCTCAGGCTACCTGTGTGAGATGGAGCCCGTGGCACACTTTGGCCTGG
Seq A exon
GTGAGTCGGGGTCCGGTGGGGGACAGTGAGCTGTTATCAGGATGCTGACTGATTCAGGGACTCACAGCCCGAGCATCCTTGGGCACCGCTCCGCTCTACTGTGACAGCCATGGTGGACACCAGCTACTGGGGACAAACCCTACTCTGAGATGAGCCTGAGCTCAAGAAGAGGCGAGTGGGAAGTGCTGGTTAGATTTTCATGCATCTCACTTGCTGGAGTCCCCACCCCAGTGCCTCTGTGGAATTAGTTCACCTTGGGGTCAGAGTGTTTAATCCTCCATTTGTTCAAGGCTGTAGGCTTGTTCAAATGCTGGGCTGCACCAAACGTGTCCAAACCAGCTGTTTCCCTGGCCTCTTGGGAGCTGGTTCAGTCTTGGACAGAAGGCTTGGGAAACCATGCGTTCTCAACGGGAGTGAAGTCACCCCAAAGGGGAGAGAGTGGGTTCTTGGCAAGGGCAGGGGGATGACAAAATCCTATCATATATATATATATATATATATATATATATATATATATATATATATATATATATGTAAAAGCATCAGGGGCTGGGCACAGTGGCTCATGCCTATAATCCTAATACTTTGGGAGGCTGAGGCAGGTGGATCCCTTGAGCTCAAGAGTTCGAGACTAGCCTGGGCAACATGGCGAAACCTCATCTCTACCAAAAGTACAAAAAAAATAGCCAAGCGTGGTGGCGCATGCCTGTAGTCCCAGCTACCTGGGAGACTGAGGTGGGAGGCTCGCCTGAGCCCAGGGAGGTAGAGGCTGCAGTGAGCCGTGATTGCACCACTGCACTCCAGCCTATGCTGGAGTGAGTGAGACTCTGTCTCAAAAAATAAAAAAAGCATCAACATGCATATAGCACATGAACAGATATACAGTATATCTGTGGCATTAATGGAACTATCACTACACACCTATTAGAACAAAAATTAAAAATAGCAACAATACCAAGTGCTGACAAGGATCCAGGTAGCTTCTGGAGATCAGAGAAACTGGATCTCTCCTACATCACTGGTGGAAATGTAAAATGATACAGCTACACTGGAAAATCGTTTGACAGTTTATTTTAAGAAAACAAAACAAACCTAAGCAAACAACTGCTACCCTATGACCCAGCTATCATATCGCAAGCCACTTATCTCACACGAATGAAAACTTATATCCACACAAACATCTTTACATTTGTTCATAGTATCTTTATACTTAATAGCCCAGAACTAGAAACAACCTAGGTGTTAATAGTTCAAGTGACTGTGATACAGCCCTTCCATGGAATATTATTCAGCTATGAGAAGAATAAACTATTGATACGTGCAAAAACTTGGTAGATCACCAGGGCACTATGGTGAGTGAGAAAAGGGGAGAAAAAGCTCATCTCCAAAAGTCACGTATGGTAGATTTTTGTTTACATAACATTCTCAAAATGACAAAATTATAAAGACGGAAAACAGATTGGTGGTTGGCAGGGCTTAGAGATGGTGGAAGAGAGAGGGGTGGGTGTGACCATCATCAAGGGCAGCCCGAGAGGGTCTTTGTGGTGCCTCATGCCATGGCAGATCCCTGGGTAGGCAACCTGCAACCATTGGGTGAAACTGGGTGAAGGGCGCAGAGGAGCTCTCTGTACTATCTTTGCAATTTCCTGTGAATCTATAATTATTTTAAAATACAACATTTTAAAATAAATGTATGGGGGGAATTGGGGAAAAAGTCTAAAGAGGCTTCTGGCAGGGTAAGGGGATTACAGTGATGGAAAAAACATTGAGAAACACCAGCAGGAGTAGAGGAGCCCAGAGTGTCTTCACTGAAATGCAATGGTTCAGAAAGCACTGGAGTCAAACATTCCTAGGTTCAAAATCAGACACCTTCCCCAGGTGTTCACACCTCATGAGATGATACCATTTTAATATAAAAGGAATAGGCACTATGGTCTCAAATTAGTAAATACAAATGTTAATATTATACACACATATGTGCAGAAAAAAAACTGAAAGGCAATGCAAAAAGTGAGAACAGTGATTCTGTCAGAGTGGCTGGATTAATATAGTAACTCTCACTTATTCTAGACACAGTGCCAAGCACTTCACTCTTATTACTTCATTTAATCCTCATGACTACCTTGTGAGATGAGCAATATTATCCCCATGTTACACATGGGAAAACTGAAGATCAGAACAATTAAGAAACCTGCCAAGGTCACATGATACTTAAATGGCAGCACTGGGATTCAAACCCAGGCTTCCTTGAGCGTGTGGTTTTTATTTTCTTCCATATGTTTTGTCGTGTGTGTGTGCTCCAATTTTTATAGGGAACACATAATATTTATGTGTAGTCTGAAAAAGAAGCAATAAATATTTAGGGGACCCAGAGCCTGGTTATATGATCATTTTCTTGGGCTATTTCACCCTGGATAAGTCAGCCTGAGGTTGGAGTGTTTATCACTCCTAAGGCAGCTATGTGCTAAGCTGGCCCTAAAGGCACAAGATACCTTTTAAATACATAGTCCTGTCTTGCAAAGTAGCAGTAGCCGACACTTATCAAGCAATTAGTATGTGCCAGGCACTGGGCTGAGTGGTTTGCCTAAGTCACTTCATTTGATTTTCACAACTTGAAGAATCAGGTAACATAACCCACATTTTACAGGTCAGAAAACTGAGGCTGAGGTCAAGTAACTTGCCCCAAACCACACATCTACAGAGTAAGGAGAGCTGGATTTGGATCCCACCTCCCTGACGCCACGGTCTGAGTTCCTGACTGTGGCTTAACACCTCTGGTAGCTGCTTTGTGCAGCCAGCCAAGCACCAAGGTGACCACCACGGTATCGTAGGTGGTTGCTTATCCAGGGTTCTGGTTGGATATCAACTCCCCCACTCCGTTGTGCCAATAAGGACATTGAGGCTCACCTCGCAAATCAATGGCAAGGGCAGAATGGGGGCTGAGATTCTCCTTCCCCACATCTCAGGGGCAGCCTCTGCTATTTTAAGAGGTGTATTAGGGGCCTCACTTGGTCCCTTCTCTGGCCAGAATCTGCCCTGCCAGGAGAATAGATTGCTTTTTTAACTGGAAAGCCTTAGCCAGGTCATGTGGTGGGGAGAAGGAGGCTCAAGAGCCCCTTCTGGGCACCTACTCCCCACACTCAGGCTTATGTACACTGCACTTCATTGGGAGCTCCGCCTGGTGCAAGTCCTTGCTATTTTGCAAGGCCCTGGGATTTGTTCTTGGTCTGAACTCTGGCTCAAACTGCTCTAAGGGGCCTCCCGGCAGACTCCTCTCTCTGTTGACAGGGTCCATTCCCAGCGGCACTAGAAGGCAGGCTGCTCTAGGGGCAGGGCCCTTGGGTCACGAGGCGCCTCAGCAGGTGGCCAACCCAGCCGCCAGGGACACAGCGAGAGGCGGGGCAGTTCCATCCCTGCAGCTCCAAGGCCCCTCTGGATCTTTTATGAGTGGAGCTCAGCACAGCCCTTCCTGACCGATGGGGGAGCCAGCAATGGAGCAGGAGCGAGGGCGCCAGTGGAGAAGGCCAGATGGAGGGAAGGACATGGGGGTGCGAGAACAGGGGGCGACAGAAAGACAGAGGTGAACCTGTGGAAGACCAAGAGAGGCAGAGACATGGGGAAAGAGGCAGAGAAGAAATGCCCCCTGCCCTCCAGGCTGGCAGTGGGCGGAGGAAGGCAGATGGACACGGGACTCTCATGCAAGGCAGATCTGGACACACCGCCATACTGGCCCCGTGGCCATGAGAGGACTCAGGCGAGAGAAATCAGTTTTGTTCTGGGCAGCTTCCCAGAGGAAGTGGGACTGGAATTAGGTCTAGAAGGACAGTAGGAGCTTAGAAGGGGTGGACGAGGGCCTAAGGAGACCATTCTAGGAGTTGGGCTGGCTTGGCCAAAGGCCCAGAAGTGGGAAGGTCCAGTCCAAAGAACGGGAATGTTTGGGAAATTTTTTTTTTCTGATTGTAAAAACAATGTATATTGATTATAGGAAAATAAGAAAACTATTTTTAAAAGAAGAAAAATTACTCATCATTTCACCACTGTTTGGAATATTAAGGAAAAAGTAAATGTTTCTTCCTTCACCTTCCCTCAATATCATTTGATTCATTTAGTGACTACATATTTACTGAGCACGTACTGTGTGCCAAACATAAAACTGAAGATCCTTGCCACAAGCCATCTACGTTCCAGTAGAAGGAACTTATATACATAATACACATAGTAAATAGGTAAATATATAAAATGTTAGAAGATATAATGGGCTACAAAAAAAGAAAATGCAGCCGGGTGCAGTGGCTCACGCCTGTCCTCCCAGCGCTTTGGGAGGCCAAGGCGGGCAGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAATTAGCTGGGCGTGGTGGTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAGTCACTTGAACCCAGGAGGCAGAGGTTACGGTGAGGCAAGATTGTGCCATTGCACTCCAGCCTAGGCAACAAAAGCGAAACTCCGTCTCAAAAAAAAAAAAAAGAAAGAAAAGAAAAGAGAAAAGAAAATGCAGAACAGAGGAATGGATTGGGAGTGCAGAGAGGAAGGGGCAACAAGGAGCAGTTTTCCAACACAGTGGTCCAGGTTGGACAGGTCATGCTTGTGATATGCCTTTATTACGTGTCATATACACAGGAACACACTTACAGACACATATTTCTTGGCAATTTTTAAAATCAAAAGAATGATATTTTCCAATTGTTTCTGTAACTTGCTTTTTTTCCCCCTCTTAACCTATGTCCAAGGCTGGGTACAGCGGCTCATACCTGTAATCCCAATGCTTTGGGAGGCCAAGGAGGGAGGATTGCTTGAGGCCAGGAGTTCAAGACCAGCCTAGGCAACATGGCGAGACCCCCCTTTCTACAAAAATTAGCCCGGTGTGGTGGTGCAAGCCTATAGTCCCAGTTACTCAGGAGGATGAGGCAGGAAGATCGCTCAAGGCCAGGAGTTTGAGGCTGTAGTGAGCTATGATCACAACACTGTACTCCAGCTTGGGTAACAGAGTGAGAGCCTGTCTTACATACACGTGTGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACATCCTGGACAGCATACCAAGTCTGTGCATATATCTTGTTTCCTTTCAGTGCTGTGGAGTATTTCACTGTGAGACAGCACTCACACTCATCATCTATTTACCCAGTCCCCTCTGGAAGGACAGTTAGATTGTTTCCAATTCTGAGCAGTTGGGGTGAGAAGCGGGAATGTCAACAACATGAATCTGAGAAAGGCCTGCCTTGAGGTCCCGCATGACTGAGGAGTAGAGGGGAGGGGCCGGCGGGAAGCTCCCCTGCCAGCACTCACAAGGCTTCAGCTTGCCTGCCCCCAGGGCCCCTGCCCCCTTCCTGCCTCCATGAGTCACGCGCTGCCTCCCCATGACTTTGCAGCAAGGTGCAGTGCGCATGTGTGAGTACACGGACATGTATGTGAGTGTGTACACGTGTGCATCTCTCAGACAGCCTCAGCCTTGCCCCATGTACATCGTGTCTGCTCCCGCGGGAGCACACCCAGAGGACGCAGGCCCTCACCTGTACTCCCCACCTCCGTCCATGGGTAATGAGTGCATGCGGGGTTCCCAGAGGGCCCACTGTGTTGTGCAGAGCTCTCATAGCGACATCTTGCTGTGGGGTCCCTTCTCAGTGGACCCTGCCTTGCTCAGTGGACCCCCCCCCACCAAGTTCCACAGCCCCTCTTCACCCTGGCCTGTCCCTGCTGCTCCTCGGTGCAGACGGACCTCCAGCTGAAAATAAGCATTTCTGCTTATGGCCCTGGTCGAGGGCTCCCCCACCGCCAACCTGGTTGCTCGGAACCCACCCCCAAGCCCCACATGCCCACCCTCCACTTCCCAGCTGGCAGCGGGCTGAGGCAGCTCACTCCCAAACCCGGAAAATAAAAACAACACCAATCATCTATTTGCCTCCGCCAGCTCCACTGGGAGTCACTGGCTCAGGCAGCCACCCCAACCATTCTCCCTCCCCCCTTCCCCCTCCCCCCCTTCCCTCCCGCCTCCACTGCCCCTGGTATTGCTGGTGCCCCAGCCCCACCCACACATGCCACCGCCTTTCAGCTAATTGCTTGCAGGTGACTCAGAGCTGCCTCTCCGAGCCGGCTGATGCTCATTTAGGGAAGGGAAATTCAGTGGCCCACATAAAAATTGCTTTATTAAAGTGCAAAAATATTCTACCAACTGTATTCCCACCATCTGTTTTGTTTGTAATTCTTCTGAAAAGTGCAATTCTCTCTGCCTCCTTGGCCTCTGTCCTTTAAAAGCTGCCAGAGGTGACTCACTGCTGCTCCTGACCTCATGTCTCTGCTGGTTAATGGGGGGCGCTCTTCTGCTCAGCCCTCCCCTATACACAGGCCTGGCAGGACCAGCTGGCTTCGAGGCTGCTGGTGTGCGGTGTCTGGGAGCCAGTCCCCCTCAGCCCGTGCAGCCCCGGAAAGACTTAAGATGTTACGCAGATTTCCTGGGCAGAGGGATGAGCTGCGCCTAAGGACAGGAGACTGGTTTCCAGTCCTAGCTCAGACACCTGCAAGTCACTTCCCCTTGTCAAGCCTCAATGTCAGTATCTGGAGAATGGGGATAAATACCCACCTCGTAAGTGTGAAGCCTCTGAAGCCCCTCCCCAGTCTCCTCTGATACACATTCCCACCTGATACACATTCTGACACTCTTTCCCGCTCTGAACTTCTTCCCGATCTTCAGCTACAACTTACCCTTTCACGCTGCTGTACCTTGGCCCACACTGTATCCTCTCCCTGGAACGCTCCTTCCTTCCCTTCTCCGCCTCACAAACTCTTACTCCTCCTGCAATACCCAAATGAAATGACCCATCTCTCTCACCACATGGTAACAGTGCTGTTGTGGCACTTTCCCAGCTTATAATATAATCACTTGTATTCATCGCTCCCATGGGAATCATGAGAATGGGGCCTGGGTCTGTCTCATTCTCTGTTGAATCCCAAATCCCTGCACAAAGCTTGGTATATGGTGGCTGCTGGGCGTGGGATAGGGTGGGCAGTGTAACAGGGGCACAGTAGATACCGGCTCTGGGATCTCTCGGACCTCTGCTGGGCAACTGGGCGATTCACTGCATCTGTCCATGGCTCCACCTTCTCATCTCTAAGGCAGAAATGATAACACTGGCACCTTCCTCGTGGAGATGTGAAGTTTCGATGCGTTAGCATCATAAAGCACTTGGTACAGCTTGGGGCACGCTGTCAGTGTTCACTGTTGTTACCAACACCTGAAAGCCCTTTGGAAACTGTAGGGAGACCCCATGACCAAGAGCCGATGGTGCCAGGGATGCTGAGGTGAATGGTTAACAGCAGGCCAGGACTCCTGCTCCAGGGTAGAAAGGCTGTGCTTCCTAGGAGTGGTAAGGCTGTTGGCCAGCACCCCCATCTTACAGATGAAGTAGCTGAGGCCCAGAGAGGATGCCCAAGTTAGCAAAACACAGTGGCAGAGGAGGGAGTCCTGCTGGTTGTGCTTTCTGAGGCCTGCTTATCTCATAGCCCCAGGCCCCCTGCACCACGTCTGGGTCTGGAGGAAGCTGCGGAAGCAGTACTCAAAACTAAGTCCCGCTGGTGGTGGTGACTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCTGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCATTTCTACTAAAAATACAAAATTAGCCAGGTGTGGTGGCAGGTGCCTGTAATCCCAGCTACTCGGGAAAGCTTTAGGCAGAAAAATTGCTTGAACCTGGGAGGCGGAGGTTGTGGTGAACTGAGATCCCACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCAAAATAAAAACAGAAAAAAAAAAAAAAAAAACCTAAGTGCCGCAAGTACCACATGCAAATCTGTGATTGTCTATGAATATTCCGTGACTCTTTTGGGTCCTTTGTGGCCCTTCAGTCAGTCTGGAAAACACATTCATGTAGCTGTTCTGCAGGCTTAGGTAAGAAACATTTGCTGTTCTTTGTCTCCTTCTTTTAATGGCAAATATTTACCTTTTATATGTGCCACTTAACTTGGGAACTGTACACCCTGAAAATGCCAAATCTCTTGCGCCTCAAGATTCTACTTCAAATTAGAAAAAAAAAAAAAGAAATCTGGCCGGGTGTGGTGGGTCACGTCTGTAATCCCAACACTTTAAGAAGCTGAGGTGGGTGGATCACTTGAGGTCAGGAGTTTGAGATCAGCCTGGCCAGCATGGCGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCGCGGTGGTACATGCCTGTAATCCCAACTACTCAGGAGGCTGAGGCAGGAGAATGGCTTCAACCTGGGAGGGGGAGGTTGCAGTGAGCTGAGATCCCACCACCACACTCCAGCCTGGGTGACAGATTGAGATACTATCTCAAAAAAAAAAAAAGAAAAAAGAAAAAAAAATCTGTAGTTGGCACTCCCCAGTCCCATTTTCACCCCGCTTCTGCAGAAGGAATTCTTGTAGATTGAGGGAGTGATGAGAAATAATTTCTTGCTTGATAAAGCAAAACCCAGAACGGTAAGGTTGGGCCTGGAAAGAGAGGATTTCCCTGTGGGAAGAGAAACTGAGCTGTGTGGGAGGGGAACTCAGTGTGTGAGGATGAGCCTCTGTCTCCGAGCCTCTCCGTTGCTGCTGCCTGCTGTGCCCATGAGGGCAGCGGCTGCCTCTCCATGGACTCTTCAGAGTGTAGCTCTGGTCCTGGCCCTCATAGGCTCACAGCATGGCAGCAGCAAGGCTGGGATGTTCCAGTGATACTCCCCTGGAGGCCAGGGTGAGAGAGCAAAAGGAGACCAAACATGGGAAGGATCTAGAAGCTGGGGGATGTGGCTCACAAGGCGTAACTCCCTCTGGAACCTCCCTCATCATGGGTCCTCCCCCCAGCACCCGGCTCCCTTCCTCCATGCCCCACAGTGGTCTCTACAGGAAGTCTACACAGAGATTCTCCTCCAAGTCTGCATGTGGCCTCCAAACCTCCTTTTCTAAAATATGGGAACCCCTTTTATACATCAAGACATTTTGCCAACTACCGTCCACCCCATAGTAGCTATCATTGTAAAATTCATTGGTGGATAGTAATGACCAAATGCGAATATACATTCAACAGCAATTTTAAGTTTAATTTGTTTTCTAACAGTATCTACATATATTAGGAAAAATAATGGTGCATATATGTGGGTGATATATTATTTAGCCTGGGAATGGTGTTTGGGGGAGTGTATTGACTTCAGGTCCCCCTGCAGGACCCCGTGTCCCCACATCTGCTCAGCCCTGATGGGTGATAGAGTGGGCTGTGTTCTCCCCCTGTCTGTGCTGGGCACAGCTCTCCTTCCCAGGGGCTGACCTGAGAGCAGCCTCTCCTGGAAGGTGAGGCCCAGCCCCCGCCTCCTCCCCACCCCAATCCATCACCATTAGCCTGACCTTGCCACAGTGACGGGCCTGTTTCCTTACGCGGGGAGCTGGGGCCTGCTTTGACAGTGCCTAAACATCTGACAAATCTTTTCAGCCTGCTTTCCACCAATGATGTGGCACGTTGCTTTAGGGTTGTGTGCAAATGGATTCACTGTGAATATCTCTGAGGTTCCCATCATCTTCTGTAAGCATCTTAGATTTGTAGAATGGTCTTTCTCCCCTGTCCTCCACCTGCCATCTCTTTATCACTCCATCTTTTCTAAGTTGTTTTTTGTTTGTTTTTATTTTTTTCAGAAACAGGGTCTCACTATGTTGCCCAGGCTGGCCTTGAAGTCCTGGGCTCAGCCAATACTTCTGCCTCATCCTCCTGAGTAGCTGGGATTCCAGGCATGAGCCACCATGCCCAGCTCTTTTTCCAAGTTATTATGTAGAGCTCAGTGCAAATGCCGCCTCCCTAAGAGGCTGTCCCTGACCACCTGACTAGACAAGGCCCTGGCAACCCCCAGCTCCTCCTTACCTACTTGCCCTACTTTTGTCAATATCTGGCATTATTTATTTGTTCATCTGTTTGCTTGTCTCCCCAACTGGACTGGGAACTCCATGAGAACAGGGGCATCCCCAGTGACAAGAGAGAGCCTGGCCCTTAGCAGAGCTCAATAAATAGAAACACAAGAAGCATTCCTGGGATAACAAAGCCAGTTAGCTGCACAGCTGGGATTTGTCCCCAGGTCTCCCACCCACTTCCCACCATGCTCTTTCCAACATACCAGGTAAGGGGTAGAGCCATGATTTGAATGCCAGACTCCAAAGACAACCTGCTTATCACAGGCCTTACTGTATCCTCCAGTACAGCCTCCTGATGCTTGGCCTGTCTGCTAGAACGTGAGTTCAAGAGCTGCACTATCCAACATGGCAGCCACCAGCCATGTGTGGCCATTAAATTTAAATTAATTAGAGTTAAATAAAATTGAAAATTCACCTCTTCAATCACGTGAGTCCCACTTCAAGTGCTCAACAGCCACATGTTACCAGTGGCTACTGTACTGGACAGCACAGATGCAGGACATTTCTGTCCTTGCAGACAGACAGGTCTATTGGACAGCATTGCTCCAGAGAGGAGGGACCTCAAATCTGTCTTGTTCACCATTTCCCTAGCACTTAGAACAGTGCTCAATTCATGCTTTTATTCAATGGATGAATTAGTTGATGCTGATGCTTCCGCTGAGAGCCTCCTGCTCTCCTCTGCTGCTGATGCTCTCTCCTTCTGCCCCTCAG
Seq C2 exon
GGAAGGATGAAGCCAGCAGTGTGGAGGTGACGTGGCCAGATGGCAAGATGGTGAGCCGGAACGTGGCCAGCGGGGAGATGAACTCAGTGCTGGAGATCCTCTACCCCCGGGATGAGGACACACTTCAGGACCCAGCCCCACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095713-CRTAC1:NM_018058:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.262
Domain overlap (PFAM):
C1:
PF0183918=FG-GAP=PD(9.5=7.0),PF075937=UnbV_ASPIC=PU(56.5=68.4)
A:
NA
C2:
PF075937=UnbV_ASPIC=PD(42.0=59.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)