BtaINT0044559 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005784 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr3:112882606-112885489:+
Coord C1 exon
chr3:112882606-112882779
Coord A exon
chr3:112882780-112885315
Coord C2 exon
chr3:112885316-112885489
Length
2536 bp
Sequences
Splice sites
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
3' ss Seq
TCTCTCCCCCACCTCCCCAGCGG
3' ss Score
8.18
Exon sequences
Seq C1 exon
CTATCATGTGCAAGCCGCCTCAACTCATCCCCAACGGGAAAGTGGTGGGATCCGACTTCATGTGGGGCTCAAGCGTGACGTATGCCTGCCTGGAGGGGTACCAGCTCTCCCTGCCCGCAGTACTCACCTGCGAGGGAAATGGGTCCTGGACCGGAGAGCTGCCTCAGTGTTTCC
Seq A exon
GTAAGTCACTCACAGGGGGCCTCCAGGGCACCCATGTGCTGGCTCCTCTCCTTCCCCGCTCAGAACTCTGCTGCTGGAAGGCCTAGAATGAGGCTCCCCTCTCCAAATCAGGGAGCTTTGTCAAAGACCACCATTAAGAAAGGAAGGGATCTTAAAGGAAGAATGTGAGAGTATCTTCATTGAGCCCTGGCTTCGGTCACTCGGTGGCGTCACAGCGGAGGGAAATTAAACCAGATACGGGAGATGCTTCTTAACTGGAAAAGCTGTTAACTGGATGGGATAGAACCCAAAGATGGAGTCGGAGGTGGGCAGGTGGGGCGGTGCTAGAAACATGCCTGACTTCAAGGATGAGACCCTGCCCTGGGACACTTGTGATTTTCCAGTGAGAGGATCATTTCTTATCTACCTGCCCTGATTATGTCTTGAAGAGCCCCAAGTCCTTTCCAGGGCTCATTTCTTACCACATCCCCCAGAGAAGGAGATTCCAGGTCATTTATTCATGTCTTACCCCATAATTGGGCTCTGGAAGGTTTTCTCCGTGCCCATGCTTTGGACAGATGGTAGGACCTATTTTTTCTTTCTGCTCGGCATTTATCTAATGCTGCAGAAAACTGTCGACATAACCCACGACACTGTTTGGGGACCTCTGAAACTTTACTTCAGTTTGGGAAATTGCAGCAGAGATGAAGGCCAGTAAAACTTGACCAGGAAAGGCAGCATGAGGTTTATGGTTAAGCCTTTAGGCCTTGACATTCCTTCCAGGAAACATGAGGAGGATAGCAAGTCTCCTGGTTCAGTCTGGACACCTTGCATTTTCTTGGGAAATAGCTGAATTGCTTTTAAACAATGAATCATGGTTATCATTTCTAAAAATGTCCCAAATCTGAAGATACAAAGAAGAATGAAATAATCATCTGAACCCTCACTTCCCAAAGATAACCAGTTAGGCTTGTCATTACACTTCCACACTATCACTAAGCATTTTTGCATGTATAGCAGTATATACACAATTTTCTATAAATCATGCTGTTCACAACTTGTATTCACTGACAGGCCATCAGCTCCTTGCTCTGTCAATATGTACTAATCTATACATCATCTTTTTTAATGGTTTTAAAAAGAATTCCTCTATTATAGATGCCACACCATTTTAATCTTCACCTACCAGTGATAAATTTGGATCTCTCCAGTTTAACCATGTTACAAACAGTTCTGCAATAAACAGCTTCAAAAGGAACATTTCTTTACCCTTGCGGTGAAGCCCTAGGAGTGAGGATGCTGGGCCACCCAGCACACTATACTTCTTGATACATGTTGCCAGAGTGTCTTCTAGAAAAAGTACTCCTATGTACACTCCCACCTGAAGTTGATGAGAATATTTCTTGACTCACACCCTCATAAACAATTGATTTGGCCAATATTATTAATATTTACCAACCTGAGAAATTTTAAAAGATGTCTAAGATTTTAAGATATCTAAGCTAAGATTTTAATTGGCATCACAGTGCTTCTTAGCAGAACTGAGCTGCCCTTTCTTTGTCATCCAAGAGTTGCTGCTTCCTGAATGTGGGGACTTTTGATCAGCTCAGCCTTTCATGGACTTCTGATTGGTCCATCCAGGCTCCCCAGATTCCAGGACCAGGCTTCCATTTGATTTTTGCATCTGATTTCCAACCTCTTGACTCTGTGTACACACACACATACACACACACGCATAGCACAAAGAATGTTCCTCAGGCTTGAAGTGATGTCTTAGGGAACTTTGACAGAGAACTTTGACTTCCATAGTCAGTTTTTTAAGATCCTCTCTGCTGTTCCAGATGAAATGGACACTCTTAGACCCTGCTTACTGTAGGGTAAGTGCACAGTCTTTGGAAGGACATTCGGCAATACAGGTCAAAAGCTGCAAACACACTCAAACCTTTAAAGATAATAAGTTCACTCCTAGAGAATTCGCCTAAGAGAATAATACAAGTTAAACAAAAGCCACATGTAACTTTATAATAATATAAAATGCCTAAGAAGAGAGTTGCGATCAGCTATAATCACTTTGTACAGCATCTCATTGCAGATTTATGTAGCCGGTAAGTGATCATAATGTCATAAAAACAGGATATGTTGACAGAATAGCAAGTGAACAAAGCAAAGTCAACAGCACCTGGACACTGGGTTTGCAGGCACACACGTGTTTCCATACGGCTGGACAAACACTAGAAGGGAAGGGGCACAAAAATGCAAAACCGTTTTGGGTAGTCGGTGATAGTTTATTTTCACTCGGTGGTCTGAACTTCCTGTAATGTTACTCCTTTACGTGGATATGATGACTAATAAGCATTTGAATCTGGAAAGGAGAGAAAGCCCCAGAGCGGCACTGAGGCAGGTGCAGCGCTGATGCAGGGCTTCTCCACAGCCAGAGTTCAAGGGGAGCCAGGAGGAGAGCAGTGCAAAGACCAGTGAGTGGGTGGCGGAAAAGGGGGGCGCGCAGTCTGAGCTCTAGACAGCGACTTGGACCTGCCTCTCTCCCCCACCTCCCCAG
Seq C2 exon
CGGTGTTCTGCGGAGACCCTGGCGTCCCAGCCCGAGGCAGGAGAGAGGACCGGGGATTCTCCTACAGATCGTCTGTCTCCTTCTCCTGCCAGCCCCCTCTGGTGCTGGTGGGCTCTCCACGGAGGTTCTGCCAGTCAGATGGGACATGGAGTGGCACTCAGCCCAGCTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005784:ENSBTAT00000007609:66
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5)
A:
NA
C2:
PF0008415=Sushi=WD(100=91.5)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]