Special

GgaINT0136543 @ galGal4

Intron Retention

Gene
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr23:4788549-4789726:+
Coord C1 exon
chr23:4788549-4788722
Coord A exon
chr23:4788723-4789552
Coord C2 exon
chr23:4789553-4789726
Length
830 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
CCTGCTCTCTGCTGTTGCAGCCG
3' ss Score
9.77
Exon sequences
Seq C1 exon
CTATCATCTGTAAACCCCCACAAGCCATCCCCAATGGCAAAGTGGTGGGCTCGGATTTCAGCTGGGGCTCCAGCGTCAGCTATGCCTGCCTGGAGGGGTACCAACTGTCCCTGCCCGCCGTGCTGACCTGCGAGGGGAACGGGACCTGGAGTGGGGAGATCCCCCAATGCTTCC
Seq A exon
GTGAGTAGACAGCCTCTGCACATCCACGGCTGGGCTGGGAGAGGGATGGGGCTGAAACACCTGGATGCACTCACTCCATTTCTGTATGTAGGTGTGAGGTCGGGTTTGTAACAGGCGTGAACTCCTTGCATGTTCGTGTTTGTGTAACACCCTTAAAGCTCGTGGCTGTTTGTCCATGTGCCTCCTTGAGTTTGGAAATCAGGGCTCCTGAAACTGGCAGAGGTGGTGAGAAAAGCCCTTTGGCAAAGGGCGCTGTGGAGTCACAGCAGAAGTTAGGAACGTTTTGTGAAGACAGAGCTTTGGCTCTTGGAAACCTGTGTACTCCATTAAATAGCTAATGCAAAAAATTAGTTAAATGTCTCATTGTGATAAAGGCAGATTTGAGTTTCTTTTCTTGGCTGAATGGCTGGCAGCTGCACAATAGCCATTTTCGTATTAAATCACACAAAGCCCTCGCTGTGTTCCTTGCACCCTTCCCTGGATCTTGTATAATTAGCGGGCTTTCTGTGTGACATGGAACCATATAGCAATTTGACATCATGCAATTAGGGACACGTTTTAAAGCTAAGCGTGCTGCTAGGGGGGAAAGAAAAGGGAGAACGAAAAAGATGGGGAGAAGTGGAAGTTAATTAACAGCAATTGGCAAAAAAGAGAGAATTAGAAGGAAAGCAGCCAGCAACGCCTCCTGCCACCAATCATCCCCTGGTCAATCACTGAGCTCCGTGGTAGTGAGCAGTGAGCTCTGGCCCATTAATAGACCCATTGCTGGTGTTTTAGCATTGCTTGCTCTCGGGGAGGTTTTCACCACCCCCTGCTCTCTGCTGTTGCAG
Seq C2 exon
CCGTGTTCTGCGGAGATCCAGGGATCCCTGCCCAGGGCCGGCGGGAGGACCGAGGCTTCACGTACCGCTCCTCTGTGTCCTTCTCCTGCCTGGCCCCACTGGTGCTGGTGGGCTCAGCACGCCGCTTCTGCCAGTCTGATGGTACGTGGAGTGGAACCCAGCCCAGCTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602:ENSGALT00000004092:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):

C1:
PF0008415=Sushi=WD(100=91.5)
A:
NA
C2:
PF0008415=Sushi=WD(100=91.5)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCATCTGTAAACCCCCACAAGC
R:
AGCTGGGCTGGGTTCCAC
Band lengths:
342-1172
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]