BtaINT0045098 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002411 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:HGNC:2515]
Coordinates
chr15:82325252-82326087:+
Coord C1 exon
chr15:82325252-82325314
Coord A exon
chr15:82325315-82325983
Coord C2 exon
chr15:82325984-82326087
Length
669 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
CTTTTCTTTTTTTAAACTAGATA
3' ss Score
8.39
Exon sequences
Seq C1 exon
ATAAGAAACCTGATCGGGAAGAAATTCAGATGAGCAGTATGGGATCAAATACGAAATCGTTAG
Seq A exon
GTAGGTGATTAATCCGTGCCTAAGCATGTGGAGGAGCAGGTCACTGGGACGAGGACTGTCTAGCACCGCACTTCTCTCCAGCAGCCTGGCTGTTTGCCGTCCTCAAGAGCGCTGGCTGCATGTTCACTGGAGGGGTTCGAAGAGATTTAGTAAAACCTGATCTGTCTACCTTTCGCCACATTTCCAAATGTTCAGAGGCTAAAAAGAAACCACTCTGTGCCTCTGCGTCACCGCAGAAGTTCGTTTGTGTCCCTTCACAGCCTGCTGCAGCGGCTGGCCGGCCCGCTCTCCCTGCTGCAGCCCGCCTGGTCTACTTGCTGGCCTGTCTCTTCACTCCGTACTCTCTTTATTTTGCTCTTGTGATGTCTCCTGTTGGAATGCCCTTCCCAACTGCTCTCTAAGCTGTCTTCTCCCCAAAGGCTTGGTTGAAGTCCTGGCTACTTCGTTAGGTCTTGCCTTACCATTGCAGCTCGCCTCACCTCTTGTCTTCTAACCCCAGTTCTCTGCATAGACAGGTCTCTTCAGTTTAGCTTCATTATCACATGCGGCATGTATTGCCCTCCCAGGGAGATGTACGTTTTTTATGTCCAGGCCTGCCAGACCGTAATGCCCTTCTGGAGGGGACACCGTCTCTCTGTGTACAGTTTTCCTTTTCTTTTTTTAAACTAG
Seq C2 exon
ATAACAACTATTCCACACTCAATGAAAGAGGGGACCACAACAGAACACTGGACCGACCCGGAGACCTAGGCGAAATGGAGCCACTGAAGGGAGCACCCCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002411:ENSBTAT00000043778:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development