BtaINT0046187 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037795 | CYP2C87
Description
Bos taurus cytochrome P450, family 2, subfamily C, polypeptide 87 (CYP2C87), mRNA. [Source:RefSeq mRNA;Acc:NM_001076427]
Coordinates
chr26:16056817-16063967:+
Coord C1 exon
chr26:16056817-16057004
Coord A exon
chr26:16057005-16063825
Coord C2 exon
chr26:16063826-16063967
Length
6821 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TCTTCATCTGTTCTTTCCAGGGC
3' ss Score
10.38
Exon sequences
Seq C1 exon
CTAAGATCCAGGAAGAGATTGACCGTGTGATTGGCAGACACCGGAGCCCCTGCATGCAGGACAGGACCCACATGCCCTACATGGATGCTGTGCTGCATGAGATCCAGAGATACATTGACCTGGCCCCTACGAGTGTACCTCATGCTGTGAATTGTGACGTGAAATTCAGAAACTACCTCATCCCCAAG
Seq A exon
GTAACATTGGTTTCTCTTATACTGACCTCAGTGGTACTGAAGTTCCCATTTTAGACAGTTTGTGTGCCATCCTCTATGAAAGCAAGACAAAAGAAGTATAAGTAATCATCTGTGTGCAGGCTTGATGAATTGTGTGTTTTTTTCAAGTTTAGTCTGTAAGCTTTATAACAGATTTTGACAGCTAGCAGTGCAAGACTTCCAAATTTTCTCTTTCTTTTATTTGGTTTGATGAAAGTTAACTGTTTACATTTCCAAATGAATCCTTTTTTCCCCCTTAGGTGCTTATTGTTGTTTTAAATGTTTTAAAATGCCTTTTCCATTCTGCTATCTGGATTGAAAATATAACTGATTTTATCATTTTAATAACTTCATATGAAGCAATCTTGCCAAATTTAAAATCAGTGTTTAAAATTTCCCTCTAGATTAATTGCAATTTCTCTATACATTGTCATGCTGTCTGGGCTAATAACTTTCTTTTAGCCTTGTTTTTATTTCTGATCTCAGAAGAATGGCGGTTAACATTTCACTATTGATAATGATATTTTCATGCAAAGATGGGCTCGATAAAGGACAGAAATGGTATGGACCTAACAGAAGCAGAAGATATTAAGAACAGGTGGCAAGAATACACAGAAGAACTGTACAAAAAAGATCTTCACGACCAAGATAATCATGATGGTGTGATCACTCACCTAGGGCCAGACATCCTGGAATGTGAAGTCAAGTAGGCCTTAGAAAGCATCACGACAAAGCTAGTGGAGATGATGGAATTCCAGATGAGCTATTTCAAATCCTGGAAGATGTTGCTGTGAAAGTGCTGCACTCAATATGCCAGCACATTTGGAAAACTCAGCAGTGGCCACAGGACTGGAAAAGGTCAGTTTTCATTCCAATCCCAAAAAAAGGCGATGCCAAAGAATTCTCAAACTACCGCACAATTGCACTCATCTCCCATGCTAGTAAAATAATGCTCAAAATTCTCCAAGCCAGGCTTCAGCAATATATAAACTGTGAGCTCCCAGATGTTCAAGCTGGTTTTAGAAAAGGTGGAAGAACCAGAGATCAAATTAATTGCCAACATCCACTGGATCATGGAAAAAGGAAGAGAGTTCCAGAAAAACATCTATTTCTGCTTTATTGACTATGCCAAAGACTTTGACTGTGTGGATCACAATAAACTGTAGAAAATTCTTTAAGAGATGGGAATACCAGACCACTTGACCTGCCTCTTGAGAAACCTATATGCAAGTCAGGAAGCAACAGTTAGAACTGGACGTGGAACAATGGACTGGTTCCAAATAGGAAGAGGAGTACGTCAAGGCTGTATATTGTCACCCTGCTTATTTAACTTATATGCAGATTACATCATGAGAAATGCTGGGCTGGAAGAAGCACAAACTAGAATCAAGATTGCCAGGAGAAATATCAATAACCTCAGATATGCAGATGACACCACCCTTATGGCAGAAAGTGAAGAGGAATTAAAAAGCCTCTTGATGAAAGTGAAAGAGGAGTGTGAAAAAGTTGACTTAAAGCTCAACATTCAGAAAACGAAGATCATGGCATCAGGTCCCATCACTTCATGGCAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTTTATTTTTTTGGGCTCCAGAATCACTGCAGATGGTGATTGTGGCCCTAAAATGAACAGATGCTTACTCCTTGGAAGGAACGTTATGACCAACCTAGATAGCATATTCAAAAGCAGAGACATTACTTTGCCAACAAAGGTCCGTCTAGTCAAGGCTATGGTTTTTCCAGTGGTCATGTATGGATATGAGAGTTGGACTGTGAGGAAAGTTGAGCACCGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTTTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATGCAAAGTGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGACTGGGGACAGGAGGAGAAGGGGACGATAGAGGATGAGATAGCTGGATGGCATCACCGACTTGATGGACATGAGTTTGAGTGAACTCCGGGAGTTGGTAATGGACGGGGAGGCCTGGTGTGCTTCAATTCATGGGGTCGCAGAGTTGGACACGACTGAGCGACTGAACTGAATGATATTTTATGTACATTTTGCTACATACTTTTTAAAGAATCAGAGTAAAAAATATGTTCTCATTTTTAATGCTATTTTTAGTGGTGAACATGTATATAATTTTTTTCAAATTGATGTCTATACTTATTGGTATGGTTGTATACATTGACCTCACTTTTCCCACTGAATATGCCTATTATAAATATATATATATGCAGTTGGATTTCTTTTGCTACATTCTGTTCAGGACTTTACTGATTATGGTTTAAGAGATTTTTGGTTTACAACTTTTCTTCCTCAACATTTTTTCATTGGATTTCTGTTTTAAAGGTCATGCTGGCATGATAAAATTAGGTGAGAAATATTTCATAGTTTGGGTGTATATTTATTGTTTTCCTCACTTCTATCTTTGGCCACTTAGTTGTGTCTTTGAAATGCCTAGTTACTTTTGGTTAAATACCAATTTTTATAAATGAAAAAATGCGGAGTTCAGATGTTATTTATTTTCTTCCAGAAAGGGTCCATCCCTCTCCTCCTTGGCAGATGGAATGATGTAACCTCTCCCATTTTGGGTATTTTGAGTAAAATTTGAACATTGACAGAGACTAATATTAACTTTAGGTGTCAGCTTTCCTCTTTGAGGTTCTCCAAACTTTGGAATATTGAGACAGATTTTTGTCTTAGCAGATTTCTCATGCTCTCTAACACAGAGTATCTGTATATATTCAGACTTTCTAGTTGGTGTGCTGAAAAGTTCTCTTATCTACTTGAAGCCAAGTCATAGTATTATTAAAATTATAAAATAATATAACTAAAATTTGTATTTTGTTGGGGAAAGAAAGCAATGAGATTCTTAAGATACAAGTACTAGTGCCAATCCTTGGAGAAGACAGAATTGATGAGTTTACTAGATTGTGAGACTTGTCTCAGTGATTGCAGTTTTGATACAAGGGTTAGAACTTCAAGTCTACTATTTTTTTAACCAAAGGACATACTGAGAGAAGACTTTTCTTTTGTGACATTGGGGTCTAAGGTAATAATTGATCAAGCTTGTTTCTCCTCTTATTTCTAAGTATGTGGGAAACACTGTACTAGAATGGAGTGGCCCATCTCTCACATCCACGGTATTGGGAAATGACCATTATAATGTCATATGTCTATTACCAAATACTGGGGATTACCATCCCCTTCTGCATAGTCCCCCCAGTGTAGAAACATAAATATTGAGTTTTATTCTTGTTTAGTCGTTAAGTCACGTCCAACTCGTTGTGACCCCATGGACTGTAGCACAGCAAGCTCTGTAGTCCTCCACTGTCTTCCAGTTTCATTAATTTCATGTCCATTACGTCAGTGATGCTGTCTAACCATCTCATCCTCTGCTGCCCTCTTCTGCTTTTGCCTTCAATCTTTCCCAGCATCAGGGTCTTTTTCAATAAGATTATTAGGAGGCTGATTCTGTTATACCTTTTTACCAATCATGTAAGTGATTAGTTTTATCCAAGTCTGGAGCCACTGAGCTAACTGGAGAATGCTCTAAAACAGGAGTATTACAGTATTTATGTAATACTTCAAAGTGTAAGTATTTCAGAATTTGAAGCTCTGAAGTGTCTGATGCCTTTTGTATCCTTTTGTATACTTCTGCTGTTGTAGCATGGAAGCAGTCAAGGACATATTAAACAAACAAGAATGGCTATATCCCTGTCTTTTTGGAAGCAGAAATTTAGATTGCATATAATTCCCATGTGCCACAAAGTGTCTTCCTTGATTATTTTCCATTTAAAATACTTAGGTCATTGTTTGTACTAAGGCCATATTTGCACATAGGTTGATATTTGTTAGTATATAAGTCTGTCTAAAAGAACATTTTGCAATGCTCTAAGATTGATGTGTGGGATTGTTTTTGTTTGTTTGTTTATCTAAAGAACGTTTTCCAGCACAGGGTCTAAAAGATTTACCCTTATAAACTTCATAATTTTAGTGCTTACATTTAGATGATGGATTATGCAGGGCTTCCCTGGTGGCTCAGAGGTTAAAGCGTCTGCCTGGAATGCAGGAGACCCAGGTTCGATCCCTGGGTCGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTACTCTTGCCTGGAGAATTCCATGGAGGGAGGAGCCTGGTAGGCTACAGTCCATGGGGTCGCAAAGAGTCAGACGCGACTGAGCGACTTCACTTTCATGTGGGTAATTTTTACTTATGACTAAGAGTAATGATTATGCTTCTTTTATTTCTCTATGAAATATGCATTTGTTTGAGCAGCATTTGCTGAAAGTATTGCCTTTTGCACCTTTTTTTGTTATCTTAGATGTGTTATTTATTTCTTATATAAACACAAACAAGGGAATAATAAAGAGTTGTATACCTTTTATATGATAACCTTAGGGGATGGAAGATTCCTCAAGTTTGCATTAATTATTTTTTAAACATAGAACATTAAAAACATGTTCATATGTATGTTATACATGAATTTGTATATTTACCTGCTTTTGCAATGTTGAGAGATAATCAATAAAAAATCTGTAATAGGAATAGAAAAGAGTTTTATTTGAGCCAAACTGAGGACTATAGCCCAAAAGACAACCTCTCAGATAACTCTGAGGAACTGCTCTGGAGAGGTATGGTCTATCCACACAATTGTATATCTTGTCAGAGCAAAGAAAATCAGGAAGCCAGAGATACATTCTTACAAGGTTTCAAAAACAGATTATCAACAAATGCACAGCAAGTTGGTATGGCCTTGGCACTTGAGAGAGGAGTCTTCTTGTTGCAAGAGTTTTAACATTGGTGTCCAAGAAAGGAGGCATTTAATCTTTATTTTTAACATGGACATTCTTTATTTCTGTTCAATATACATTTTCTTAATAATTAGTGCGTATGTTTGATAGGCCACAAATAGGATGTTCTAGTTAGCATTTAAGTTAAATTCAAGTTTACAAACTAGAATGACTTCTCCATACCTCAATATGTAAAAATTTCTTCCACAAATATTCATTTATCAATCTATCATCTACTTTTCTACACTTCTCTATTTCCGTATGTATAGCTCAAAATAGCAATTTTTGTATACAGAGCAATAATAGCAATTATACTCAAGAGTTATCATTGATAGAATAATATTATTTAGTGTACAGCCTATATTGAAAATTTCCTAGTTTTTCTGTAATAAACTTTATGGCTTTTTTTCTTTGAAAATCAGTGTCCAGGCTGGAAACAAGATTATAATTTGGACATCTTTTCCTTGTTCTCCCTGTTCTTTCCTGTTACTAGTTTTGTTTGCCCTCTTTGTTCTCTTTTAGTACATTTTAACTCTGTGAAGAGTGCAATTTAGTAGTCATGTGAAATATTCCTCAGGCTGGTTTTGTGTGATTGTTTTCTGGACATAGATTCCAGTTACAATTTCAACTATATAGGTGCTTTGTGTTTCCCACTGAAATTCATTGGGTAGGTGAAGGCACATACGTGAGTTATCCCATTATTGGTTATGTAGTATTGTTCATAACCTCCCCCACAATGTAATTGTGGTCTGATATGGACTAAAAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACAGAGGAGCTTGGTAGGCTGCAGTCCATGGGGTCGCTGAGGGTCGGACACGACTGAGCGACTTCACTTTCAGTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTATCGTCTATGGGGTCACACAGAGTCGGACACGACTGAAGTGACTTAGCAGCAGTAGCAGCAGTATTGTTCACATGATAAAACGGTATCTGCCAGATTACTCCATGAAACAGGTCCTTTTTTTCACATTTAATTAATAAAAGATTACCTGGTACTTTTTAGATTTGTATCTTTCTTCTCAATCATTTACCCAATGGTTTTAGTGTTAATAGATAAAACTTGCTTAAACTAATGATCGTAAGCTGAATTACTGTGAAATGATTTTGTGAATTTTACAGTCCTTTCTGTGTTTCAAATCTAGGATTAATCTGTGATGAAGTCTGCCCTATATTTTAAAATAAAGACATACAATCTGCATGTCAATGATAAACAATAATATTTGTTACTGTACTTACATTGTTATTATAGAAGAGGTTATTTTGTATTAGATCAAATGCCTGTTTACAAAAGCCATACAAACAGATAATTTGAGACATTTCAAGCACAATAGAGACTTCCACATTAAACCATAATCCACATAGAAGATGAGTAAAAATTGAAAAGATAAAGCAGCTGGTGGGGGCAGATACCATGTCCTAATGTGGTGATTAGCAGAATGGATTCATAAGTTCTAGGACCCATGTACTGAGTATTTCAGATGCTGCCAGTGTTCATTTTGGCAGCATCACCACCACTAGTCTTAAACTTATCCTTATTACTTGTTCTGTCTGACTCAAAATGCCACTGACCTTCTTTTGAACCAAAATTAATCATCTATTGATCCTAAGATTGGACTAAATGATTTTCAGCAGTTCTTCTAGGTCTGTGACTTCTTCATAGTTTAATTTATCTTCATCTGTTCTTTCCAG
Seq C2 exon
GGCACAGATATACTAACATCACTGACTTCTGTGCTGCATGATGACAAAGAATTCCCCAACCCAGAGGTATTTGACCCTGGCCACTTCCTGGATGAGAATGGCAACTTTAGGAAGAGCGACTATTTCATGGCTTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037795:ENSBTAT00000027159:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]