BtaINT0046200 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046805 | CYP2F1
Description
cytochrome P450, family 2, subfamily F, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2632]
Coordinates
chr18:50348689-50349390:-
Coord C1 exon
chr18:50349214-50349390
Coord A exon
chr18:50348831-50349213
Coord C2 exon
chr18:50348689-50348830
Length
383 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCGGCCCTTAACCCCTGCAGGAA
3' ss Score
7.89
Exon sequences
Seq C1 exon
ATGTACAATATCTTTCCGAACCTCCTGGACTGGGTGCCCGGGCCACACCGACGCCTTTTTAAGAACTACGGACGCATAAAGGACATCATCGCCCGCAGCGTCCGTGAACACCAGGCTTCCCTTGACCCAAACTCTCCCCGAGACTTCATTGATTGCTTCCTTACCAAGATGGCACAG
Seq A exon
GTAAGTAAGCCCTACCTGGAAGTCCCATCTCTGATCTGACCTTCCATCCTGCTTCGAACCAACAAGGATCTCGAGATGAGCGTGTTTGGGTCTGAACTCCCCACATCCAGGAAGTGAAGGTGGATCACCTGGCTCTTCTGGGGCCACTCAGGGCCTCCGACAATTAACAGGCTCATTAAGAAATCCTTCAGGGTTTGTTTATTTGATCGGCCGCTTGGCTGAGATTTTCCCTACCCTGCCCTCCGCGCTCCCCAGATCCCCTAAGGAAAGGAAATTGAACGGAGGAGGCGCTGAACTGGCACCCAGTAGCAGCTGTGCAGAGTCTCGGCGCCCAAAGATCTCCCTCCGCCTTGGCTCACATCCCCGGCCCTTAACCCCTGCAG
Seq C2 exon
GAAAAGCAGGACCCGCTGAGCCACTTCTTCATGGATACTCTGCTGATGACCACACACAATCTGCTCTTCGGCGGCACTGAGACCGTGGGTACCACGCTGCGCCACGCCTTCCGACTGCTCATGAAGTATCCAGAAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046805:ENSBTAT00000063781:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(15.5=100)
A:
NA
C2:
PF0006717=p450=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTACAATATCTTTCCGAACCTCCT
R:
TTGCACTTCTGGATACTTCATGAGC
Band lengths:
318-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development