DreINT0148510 @ danRer10
Intron Retention
Gene
ENSDARG00000068493 | si:zfos-411a11.2
Description
si:zfos-411a11.2 [Source:ZFIN;Acc:ZDB-GENE-131119-33]
Coordinates
chr15:90646-91067:-
Coord C1 exon
chr15:90891-91067
Coord A exon
chr15:90788-90890
Coord C2 exon
chr15:90646-90787
Length
103 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
TTTTCTGTTCTCTACAACAGGAG
3' ss Score
10.07
Exon sequences
Seq C1 exon
CTCTACAACATCTTCCCTAAAGTCATGGAGATCTTACCAGGTAGACATCATACCATGTTTGGAGAGATTGATGATCTCAAATCCTCCATAATGACAATTATCAAGGAGCATGAGGAGAATTTGGATCCCAGTGACCCAAAGGACTTTATTGACTGCTTTCTTATCAGGCTCAATCAG
Seq A exon
GTATAGAAAGCAAAGAAAAATACACAATTATTGTTCTAGTCTATCTGCAGGTCAATTGCCATATACACATATGCCTTTTCTCCTTTTCTGTTCTCTACAACAG
Seq C2 exon
GAGAAACATAATCCTGATACAGAATTCCACAAGGAAAACATGTTTGCCACCTCTTTAAATCTGTTTACAGCTGGTACAGAGACCACCAGCACAACTTTAAGATACGCTCTAATGCTCCTGATCAAGCACCCTCACATTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068493:ENSDART00000099074:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCATGGAGATCTTACCAGGT
R:
CTGGTGGTCTCTGTACCAGCT
Band lengths:
246-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]