MmuINT1008043 @ mm10
Intron Retention
Gene
ENSMUSG00000091867 | Cyp2a22
Description
cytochrome P450, family 2, subfamily a, polypeptide 22 [Source:MGI Symbol;Acc:MGI:3648316]
Coordinates
chr7:26934761-26936485:-
Coord C1 exon
chr7:26936309-26936485
Coord A exon
chr7:26934900-26936308
Coord C2 exon
chr7:26934761-26934899
Length
1409 bp
Sequences
Splice sites
5' ss Seq
AAGGTTATC
5' ss Score
0.62
3' ss Seq
CTCTCTCTCTCTTTCACCAGGAG
3' ss Score
12.32
Exon sequences
Seq C1 exon
CTCTATGACATGTTCCATTCAGTGATGAAGTACCTGCCCGGACCACAGCAACAGATCATCAAGGATTCTCATAAACTGGAAGACTTCATGATACAGAAAGTGAAGCACAACCACAGTACCCTGGACCCCAATTCCCCACGAGGCTTCATTGACTCCTTTCTCATCCACATGCAAAAG
Seq A exon
GTTATCACAACATCTGGGGATGGGACATCTAAACCAGGGCAGCTGGAAATCACCCTAGAAGAGGAGGAACAGAGGTCCATTAAGTCCCCATGATGCTCCTCACAGAGTCGATCATAATTAAACATCACTCTTCTATTTGTTGAGCCTTCCTTATGTAAGCCAGCGTATGGGCAAGCAAATTAACATGCTAACCAATATCCCAGTGTTCCCCTTTGAGACACTGTTATCAGTGCATCCTGCTATTTGCCTAGTTATCATGCACTGAAGCTACTGTTGAAGATCCTGTGGAGCTTAAATTTCACAAAGAGTGAAAGTGTGCCCAGAGTTGCATGCTGACTTCATGCAGCCAGAAAACCATGCACTCTTGCCTCTCTGTGGCTCTCAGGCTTTTGCTCTTGGCCATGTGCTTTCCAGCATTTCATATCTCCATTAGGAAATACACATTAATACATATCAGTGGGCTAGGCAACTTAAGTGTTTTACTTGATATCAAAGGACTTCTTTCACAACTGAGAAGAAAGGACATAGAATTCTATTGCACATGAAGGTCAAGGGTCTGTTTAGGGGCTCTTCTATGAGTTGAGGGAGGAGAGAATGAAGTTTAAACTCTGATCTGTGTCTCAGATCTATCTCTAATAACACACTCCATCATGGCATCTGGGTTCTTTCTCACAGTCCTTACCCCTCACTGTCTAAATATCCCAACCGTGACATGAGTGGCAGACAGTCAGTAGACAGAGAAGTGAGCAAAGCTTCTCATCCAAACCCAAGGCTCCACACAACCTTGAGATTACCTTTCCCATAGTTGTCTGGACCCTTTGAGAATAAGATCCAAAGAAAAGTCCAGAAATGGTGCCTGTTGGGTCACTCTCCTCCATGAGGAACTTAATCCACAGTTGATGGCTATTGAGAGAAGAGGAAATCATACTCCTTAGTGGTGTGGCTACTAGTAAATTATCCTTTCTCAAGTAAAGAACCCTTTACCCATACTCATGCAGCCAAGCCCAGTTATAAGCAGTTGCCCCCCCAAAACCCCCCAAAAACAAAAAAAACCCAGGAAAATAGGAAGGAGGCTTATTAGGGATAAGAAAGAGTTCCACAAAGTGGAAAATAGAAGATAATAGAGGGAAATATGGTTAAAGTGCATTTCACATATATGTCTAAAAAATGAGGACTCAAGGTTCAGTGGGTGTGGAAGGGGATTCATCTGGGAGGGGGAGAGGTGTGAATATATTCACAGTAAAATAAATGAAATTCTCAAAGAGTTAATAAAAATATTTGTAAAAAAATGACTAGAAAGTTTTAGAAAATTAAAATCCTTAATGTTCCCCAAGAGGATGACAAACTGATAGATTTGTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCACCAG
Seq C2 exon
GAGAAAAATTTTAATTCAGAGTTTCACATGAAGAACCTAGTGATGACATCATTGAACCTCTTCTTTGCTGGGTCTGAGACAGTCAGCTCCTTACTACGATATGGCTTCCTGCTACTAATGAAGCATCCAGATGTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091867:ENSMUST00000170227:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATGTTCCATTCAGTGATGA
R:
CCTCCACATCTGGATGCTTCA
Band lengths:
311-1720
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types