BtaINT0046292 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015735 | CYP4F2
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 2 (CYP4F2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075322]
Coordinates
chr7:8443544-8443815:-
Coord C1 exon
chr7:8443762-8443815
Coord A exon
chr7:8443672-8443761
Coord C2 exon
chr7:8443544-8443671
Length
90 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CCTGTGGCTGTCTCTGCTAGGGG
3' ss Score
7.77
Exon sequences
Seq C1 exon
CTGCCATTGCACCCAAAGACATGCAGTTCTATGGCACTCTAAAACCCTGGCTTG
Seq A exon
GTGAGTAACTGTGAGTGAAGGGGATTGGGGATGACTTTGGGGATCCAGGGGAAGGTTCCTTTGCTCACTCCCTGTGGCTGTCTCTGCTAG
Seq C2 exon
GGGATGGGCTCCTGCTGAGTGCCGGTGACAAGTGGAGCAGCCACCGTCGCATGCTGACACCCGCCTTCCACTTCAACATCTTGAAGCCCTATATCAAGATTTTCACCAAGAGTGCAGAGATCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015735:ENSBTAT00000020890:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.9=100)
A:
NA
C2:
PF0006717=p450=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCCAAAGACATGCAGTT
R:
GCATGATCTCTGCACTCTTGGT
Band lengths:
173-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]