RnoINT0044606 @ rn6
Intron Retention
Gene
ENSRNOG00000043344 | Cyp4f40
Description
cytochrome P450, family 4, subfamily f, polypeptide 40 [Source:RGD Symbol;Acc:1559596]
Coordinates
chr7:14871358-14871629:+
Coord C1 exon
chr7:14871358-14871411
Coord A exon
chr7:14871412-14871501
Coord C2 exon
chr7:14871502-14871629
Length
90 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GCCAATGGTCACCCTTCCAGGGG
3' ss Score
6.57
Exon sequences
Seq C1 exon
CTGCGGTTGCTCCCAAGGATGGCATCTTCTACAGCTTCCTGAAACCCTGGCTGG
Seq A exon
GTGAGTCCTCAAAGGTTAGGTGATTGGGAACAGCCCTGGGACCCAGGAGAAGGTGTCACCTTTGCCCACTGCCAATGGTCACCCTTCCAG
Seq C2 exon
GGGATGGGCTCTTGGTGAGTGCCAGTGACAAGTGGAGCCGCCACCGTAGCATGCTGACACCTGCCTTCCACTTCAACATCCTGAAACCCTATGTGAAGATTTTCAATGACAGCACCAACATCATGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043344:ENSRNOT00000066654:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.9=100)
A:
NA
C2:
PF0006717=p450=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCAAGGATGGCATCTTC
R:
TGCATGATGTTGGTGCTGTCA
Band lengths:
173-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]