BtaINT0046308 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048257 | CYP4F3
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 3 (CYP4F3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046391]
Coordinates
chr7:8615685-8616384:-
Coord C1 exon
chr7:8616331-8616384
Coord A exon
chr7:8615913-8616330
Coord C2 exon
chr7:8615685-8615912
Length
418 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
3' ss Seq
GTCTCTTCCTTTATCCTCAGGAC
3' ss Score
11.24
Exon sequences
Seq C1 exon
CTCCCAGAAGGAGGACAGAGGAAGTTGTGTGGGACAAGCTGCTCCTGACCGAAG
Seq A exon
GTGCTGGGCTGGTGTTGCTGGGGCCGAGGGTTCTGGTCTGGGGCAGGAAGTGGGTGCTGCTCTAGACAGGGTAGCTCCAGAGAGAGAGACGCACACCCCCGCCTTCCCCTCCCCGGGGATGGTGGTTTCCTTGCAACTGGAGCTCCTGGCAACCTTCCACTAACTCGTTTCTTCATCTGTCTTTTTCTTTCTCTCTTCTCTCTCTTCCTTTCATTTCCCTTCCCTTTCTCTTTCTTTATTTTTCTGTCTCTCTTTCTCTCTCCCTCTTCCTCTGAATTTCTGTTTCTCCCTCTCCTTTCCCAGTCCCTGTCTGTCTCTGAGCCCTTATTGCCCATCCCTGCCCCTCACTCCCTTGCTCCTCTCCCTCTATCCATCTCTGCTTCACAGTCACCATTACTGTCTCTTCCTTTATCCTCAG
Seq C2 exon
GACTCACCCTCCACCCCATCTGACCACAGGATGCTGGAGCTGAGCCTGTCCTGGCTGGGACTCGGGCCGGTGGCAGCCTCCCCGTGGCTGCTGCTGCTGCTGGTCGGGGCCTCCTGGATCCTGGCCCGCATCCTGGCCTGGATCTACGCCTTCTATGACAACTGCTGTCGCCTCCGATGTTTCCCGCAGCCCCCCAAACGGAGCTGGTTTTGGGGTCACCTCGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048257:ENSBTAT00000036384:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=PU(3.0=21.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGAAGGAGGACAGAGGA
R:
GCCGAGGTGACCCCAAAAC
Band lengths:
278-696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]