MmuINT0045405 @ mm10
Intron Retention
Gene
ENSMUSG00000091586 | Cyp4f17
Description
cytochrome P450, family 4, subfamily f, polypeptide 17 [Source:MGI Symbol;Acc:MGI:3646233]
Coordinates
chr17:32506462-32507092:+
Coord C1 exon
chr17:32506462-32506578
Coord A exon
chr17:32506579-32506893
Coord C2 exon
chr17:32506894-32507092
Length
315 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCG
5' ss Score
5.74
3' ss Seq
CTGGCCTATCTTTCTTGCAGGAT
3' ss Score
11.33
Exon sequences
Seq C1 exon
TGGGCCACCGAGGGATTGGCTCAGTCCAGCTCATCGTCCTGCTCAGCCGGTAGCCAGGATCAAAAACATTTCCAGGGAAGAGCGGACGTTTCTGGGACGCATTACTCCTGAGAAAAG
Seq A exon
GTGCCGGACTTGGGACACACGGAAGGCCCCTACTGAACAGTGGAAGCTCTGTTACAGCTGGGGTGGCTCTGCAGGCAGGCCTGATTTCCCAGTTACTACGCTACATACCTGTGCTTCAGTCTAGGCCAACGCAGACTATAAACAGATCCTATCTGCCTCTCTCCTGCCTGATTCTCTGTCTCTCCGTAGCCCTGGGTGTCCCTTTTCCTTCCTGTGTTCTAGTCCTCTAAGTCACCATCTCTGTCCAGTGACCATGGAGGGCCACCTCTGTCTCCTGGGCCTCAGGATCTCACTTCTGGCCTATCTTTCTTGCAG
Seq C2 exon
GATGCTACAGCTGGGCCTGTCCTGGCTGGGACTGGGGCCTGGAGCTGCCTTCCCATGGCAACTTCTGCAGTTGGTTGGGGCCTCCTTGTTCCTGGCTCGAATTCTGACCTGGATTTGTGCCTTCTATGACAACTACTGCCGTCTCCGCTGCTTCCCCGAGCCCCCTTCGCGGCACTGGTTTTGGGGTCACATGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091586:ENSMUST00000165999:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=PU(10.4=21.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCGAGGGATTGGCTCAG
R:
TGCTCATGTGACCCCAAAACC
Band lengths:
310-625
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types