MmuINT0045405 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:32643407-32644037:+
Coord C1 exon
chr17:32643407-32643523
Coord A exon
chr17:32643524-32643838
Coord C2 exon
chr17:32643839-32644037
Length
315 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCG
5' ss Score
5.74
3' ss Seq
CTGGCCTATCTTTCTTGCAGGAT
3' ss Score
11.33
Exon sequences
Seq C1 exon
TGGGCCACCGAGGGATTGGCTCAGTCCAGCTCATCGTCCTGCTCAGCCGGTAGCCAGGATCAAAAACATTTCCAGGGAAGAGCGGACGTTTCTGGGACGCATTACTCCTGAGAAAAG
Seq A exon
GTGCCGGACTTGGGACACACGGAAGGCCCCTACTGAACAGTGGAAGCTCTGTTACAGCTGGGGTGGCTCTGCAGGCAGGCCTGATTTCCCAGTTACTACGCTACATACCTGTGCTTCAGTCTAGGCCAACGCAGACTATAAACAGATCCTATCTGCCTCTCTCCTGCCTGATTCTCTGTCTCTCCGTAGCCCTGGGTGTCCCTTTTCCTTCCTGTGTTCTAGTCCTCTAAGTCACCATCTCTGTCCAGTGACCATGGAGGGCCACCTCTGTCTCCTGGGCCTCAGGATCTCACTTCTGGCCTATCTTTCTTGCAG
Seq C2 exon
GATGCTACAGCTGGGCCTGTCCTGGCTGGGACTGGGGCCTGGAGCTGCCTTCCCATGGCAACTTCTGCAGTTGGTTGGGGCCTCCTTGTTCCTGGCTCGAATTCTGACCTGGATTTGTGCCTTCTATGACAACTACTGCCGTCTCCGCTGCTTCCCCGAGCCCCCTTCGCGGCACTGGTTTTGGGGTCACATGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
-Cyp4f17:NM_001101445:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCGAGGGATTGGCTCAG
R:
TGCTCATGTGACCCCAAAACC
Band lengths:
310-625
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: