BtaINT0046896 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007683 | DCAF17
Description
DDB1- and CUL4-associated factor 17 [Source:RefSeq peptide;Acc:NP_001178418]
Coordinates
chr2:25064661-25068201:-
Coord C1 exon
chr2:25068190-25068201
Coord A exon
chr2:25064798-25068189
Coord C2 exon
chr2:25064661-25064797
Length
3392 bp
Sequences
Splice sites
5' ss Seq
ACTATGCAA
5' ss Score
-19.93
3' ss Seq
TCAGTTTTATCTCTTTTAAGGGA
3' ss Score
8.55
Exon sequences
Seq C1 exon
CCATGTCCGACT
Seq A exon
ATGCAAGAATACTGGAGTGGGTTGCCATTTCCTACTCCAGGGGATCTTCCCTACCCAGGGATCAAACCTGAGTCTCCTTCACTGGCAGGTGGATTCTTTACCACTAAGCCAGACCCCTGTGTTAATTAGAAATGTGTCATTTAAGCTCCAAGTATTTGGAGATTTTACAGCTATCTGTTATTGGTATCTAACCTAAATCCATTATGGTCTGAGACCATATTTTATATTTTTTTCTAGTCTTTTAAATTCTAGTATTTTATGACCCAGAGTGTAGTCTGTCATGGTGAACTCTTCACATGGGCTTGAGGAGAATGTATTGTTGCTGAAGTAGTCTAAAGATGTCAGTTTGAGCCAGCTGATTGTCGGTACTGGTCAGTTCAACTATATTCTTACCTACTCTATTTGTTGGATCTGTCAGGTACTGATGGATTGTTTTGAAGTCTCTAAGTATAATGGTGGATTTGTCTGTTTCTCCTTGTATTCCACCATTTTTGTCTCAGTATTTTGACATTGTGTTGTTAGATGCATTCACATTATATAATTCTACTCTTTATCCCTGATAATTTTCAGTATGGAAGTCTACTTTGTCTGATATTAATATGGTTACTCCAGCTTGCTTGCTTTTTTTTTTTAAGTTAGTATTTGCATGGTATATCTTTCTCCATCCCTTTGCTTTTATATCTGTGTCTTTATACTTAAAGTGGGTTACTTGTATATAACATATTCAAGTCTTGTTTTTTATTCACTCTATCAGTTTGTCTTCTGACAGGTGTATTTTAGACCATTCACATTTAAAGTGATCATTGATATAATTGGTTTGATACCTCCCACATTTGTTTTGTTCTCTTTCTTCTTCTTTTGGTATTCTCATTATGTGTACATTACACGTTTCTAATTATCCCACAGTCTTAGATGTTCTGTTCTTTTTTTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTAATACTGTGAATATACTTTTAATACCATTTTTTAATCTTGAAAACTAGAAAATGTTATGAACTGATTAAAGGTTTCATAAGCAATATAAGCTAGTTTGCAGTTATTCTCAATGTTTAAGAGATTATTCTACTTAATATATTGAGACAATAAGTATTTAGGGCAGGAGTTATGTTTCATGACTCTGAGAGTGGATTCTTATGGGTTTCCTCTATTAATCTTCTTAGGAAATAATAAGATAAAAATGAAAAATAAAATAACAGATAAGCTCATTCCATCAGATCCATATTGCCCCTGTGTGTATTTTTCAGAACACTTTTTTCATAAGATATTAACATCTTATCCTTGTTAGAGGAGTTGGGAAACAAATTTATTTGTAGAATTACTTCACAGAGCCTTTAATACTATTAATACTTATAATAATACTAATGTGGATGGTTATTGTCAAACCATTTTCCCAACTCTTTTGATCATAGAACTTCCTATTTTGAGTTATATTTCTAAATATTAATTTTCCATGGGATCAGTGTTGTAAGAAACATTTAAGGAGTACTGCAGCAAGTTAATCCAGTCTTTTAATCTGGCTGTTTTGTTTTTTAGGAAAAATAGGATATATCACCAAAAATAATGTTTAAAGTTAATAGCCTATGCTTTGCATTTATTATTATAATTCTTTAAAAGGAATAAAAAAGACTTGTTTGTACATAAAATTGTAATTTTTCCTGGACAGTTACTCTCTTTTCATTGAAGTTTCCTTTTTAAAAATAAGAAGCTTTAAATCTACATTTTCTTCCCCAACTCCTTATTGAAAGTTAAAAATAACTATTTTGCCCCCAACATCTAAAGCCTTCTAATCCACTTTCATTGATGAGGGGAAGAGGATGACAGATTCCTTAATTGAGAAAAATTTTGAAAGATGTCAATGCAAAGCAACAAAAATTTAGAGCAATCTTTATAAAAATAAAGTTTCTAGTAACCTAATTCCTAATCTCACTTCTCTTTGAACATTTTGCTCGTCTTATTTGAAGTGAACCAAGATTTTCCATTGAGAAAAACAACAAAGCATATAGTATTGTTGTTAATATACTCATTGTGAAACTAAATTTAAACTTCTCTTCTCTTCTTTAAACTTCTCTTCTGAGACAGTGTGTGAAATACAACTTTTAGTTTAGGAAAATAGCTCAAACCTATTACGTTTGCTACCTAATTTTTTTTAATAGGCAAGATATAAGTGATACATTTTTTAAAACTTTAAAAATTCCTTGAGGTAATACTTATGTAAGACATCAAAGAATAAAAAAAATTACATCATTGCCTGTGATTTTAGTGTAGGACTTAAGTAGCTAATAAGTTAAAACACACACATACAACCAAGAAACAAACACACACAAAAACCTAGTTTCTTTCCCTAACATTTGAAACAGGAGACAAATCTTAAGGCACGTAAGTAAAATAAATGTGCCTGCATTCTTTTCTATTCCCTTTTCAGCCGAAGCAATATTAGATTAATTTTAACTTCTCTATTCTTAACTTTCATCTTTGAACTTCCTTTTTATTCTGCAAATCAAAGTAGAACCCTTAGCTTCTCTTTCTCTTCCTGCCCTAGAGGTGGAAGTGGCAGATGTGCCCTTTTGGAGGGTAGTTCATTGGAGTCAAGGATTATCTTTAAAAGTAGGTCCATCTCTGTTCTTTGGCTGCTTTGATTCTGGATGTTAGCTTTCCATTTGGAGTTAGAGTAGAGCCACAGTGACTAGTGGGATAAATTGCTTTTTTCCCATTTTAACTTCTATCAATAGGAAAACAAGTCTTGGAATAAAGAAACATCTGTTCTAGGAAATGACTCTTAATTGCTTATGCTATCTAATGTTATACTTGGTTTTAAGAACTGTTATTGTTATCATAGCAGCATCATTAGTATTACTTGTATTACTGTTGTTATTATGATGATGATTGGCTAACATTTGTTGAATACTTAATGATTAATAATTAATAAGTAATAATTATTTCTGGAGAAGGAAATGGCGACCCATCCAGTATTCTTGCCAGGAAAATCCCATGGAAAGAGGAGCCTGGCAGGCTACGGTCCATGGGGTCACAAAAGAGGCACAATTTTGGCGACTAAATGAAAAAATAATTATTTCAGGTACTGCTTAAGCATTCTGTGTGAATAAGCTGACTTAATAAATTAATAATGAAAATCATTTCTCACAATTTTAATCTTTCCTCATCTTATTTATTTTCTCACTAATATTTCTTTTTAAAATTTACTTGTTTGACTGTTTAGCTGTTTTCTTTGGATATGGATTACTGTAGATTGTTCATGATCAAGCAGTTTCAGTTTTATCTCTTTTAAG
Seq C2 exon
GGAGAAATGCTTCCCAGTCCATCAGATTATAAATCTTCACTCATAGCACTGACTGCTCATAATTGGCTGCTTCGTATATCAGCAACTACAGGAAAAGTCCTTGAGAAAATATATCTTGCTTCATATTGCAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007683:ENSBTAT00000010105:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]