GgaINT0046073 @ galGal4
Intron Retention
Gene
ENSGALG00000009558 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
Coordinates
chr7:17533940-17536103:-
Coord C1 exon
chr7:17536013-17536103
Coord A exon
chr7:17534080-17536012
Coord C2 exon
chr7:17533940-17534079
Length
1933 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
ATAACCTTTTTGTTACACAGGGG
3' ss Score
7.68
Exon sequences
Seq C1 exon
CATTGCACAAGAGCCAAGAATACTTTATCAAAAGCCAAAGTGTTCTGAGTCAGAAAAAATAGAAGATGCTTTATTATTGGAATGCCCACTG
Seq A exon
GTAAGATTACTTTTTACTGGAGCATTGTTTTGCAAAAACAAATGACTATCTTTCCAAAGAACGGGTTTGGCATAGAGCTAAACAGAGCGTAGAGCATTCTTACCCCGTTAACTGTTTTTGTCAACATTTTTTTGAGTTAAGTCAATCGAGGTTTGCATCATATGCTTATTTTGACAGAATGTATGCTTAGGGGCATACTCTAAATTTTTCAACAGTGCATTTAAGTGCTTTTTCATGAACACCCATGGATGATTTTAAAAACTGTGCCTTTACACTTATGTAACTCAATTCTAATTCCTCTAATTCCTTACAACATAAATTGTTTTATTTATTTATGAGTTTTCAAGGGCAGTAGATGGGAGTTTTTTTTTTTTTTTACCAGATGTTAACATTTTATATATAAAAAAAGGGCTAGTGAAGTAACTCTGTCCACAAGCTATTCTGCTCCTTCTAGTTAATAATCTTTATTTTAATTAATTTTCCTCCTTTCTTCCCTTACATTCATAGATACTCATACATAGATAGTCTTGCTGCAGTATTTAGACTGAAGCTTGTTCTGTTTTCTCTCAAAAACGTAAAATTTAAAATAAGTTAGACAACTCAATTAGCCATATTTCATTGAGCAGCGTAGAGAAGTATTTCTTCATTCATGGGTTATTTTGCATGCTTTGAAATGTCTGATTGCACAGTTAATGAGTATACTGATGTTAGGCTAGAAAGATAATTGTGTTAGAGAGGGTTAATCAGAGACGAATGGAAAGCTTACCTATGTCCTGGGCTCACCAAAAAAGACTCCAAGTGGAGCAATCTCCAAAGAGAGAGAGAGAGAGAGATCCTTCCTCAGTGGCAGTCAGCCCTTAAATGCGGTCTAGGAGAGGTGCAGCCAGGTTCCACCCCTTCTGGTCACACAGCTGAATTGCCTTCACCTGTGCTCCCCGGGCTGACTCAGTGCTTGCCTCAGGTGGTCAGTCAGAGGTTCAGGCTGTGATTCAACAGTTCCCATATGCTGATTCACCTGGTGGAATTTTAAACTCTAATATTTTGTACTTGAGAGCACCCTGCTGAGATGTAGTCTGGAACATACAAGGAAAGAGAAATTAAAAATGCAATCAGTATTTCTGTATTGTTCTTCTTAGTGCCTATGGTATAGTAATATCATGCAATTTGAATGTCTTTTAGTTAAAAATCAAAACTCTGTTCATTGCTGTTACAGATGGATTTTCCATTTGACTTCAAACTGATAATGTTTTCTATAGCTGTAAAACTTGGCACATTTGATGCCACACACTCAGACTTCTAATCCTTTGTCTTTGTGGGATACATTTTTGTGTTATTTTTTCTGAAGCAAGAGTTCTAATACAATTTGACTATTTCATCTGAAAAGGTCTTTATGGATGCACATACGTGTACTGATTTAGCTCGGTTCTAAGCTATAAGAGCTTAGTCGCCTTAGACTATCTGTAGAGAACATTTCCCCTTCTTGAGGATTTTTTCACTTGTGCACTGTCCACAGAACCTAGGAATATTATTTCCATATTTGAGGCACCAAAAGTAAGCAGTTAATATTGAGTTACCACTCAGCAATTTTTTTCTGCAGTACTTATAAAATAAAAAAGAAGATTATAAAAATGTTCATGTGAAGATTTGGTATCAGCTGTATTGATAAGCAGTCATACTTCATTTATGCAAGGCAAGGAAGTTGTAAAAGGTGTATTTTCTAGAAAAAAAGTAATTACATTGCAAAAAGTGCAGCATCAAATTAATTATATAGCAGTCAGCTGATTATTTAGCACAAACATGAGCTTAGAGATTCTGATGTGATTATCAGGAAGCTTTCCATCTTTAGTTTTTGAGGAACGTGTATTTATTTCTCTCTTGCTGTTATGTAATGTCCTGGTACAAACTTCTTTATGATAACCTTTTTGTTACACAG
Seq C2 exon
GGGGAAATGCTACCAAATCCATCAGACTATAAACCTTCCCTTATAGTCTTAACAGTGCAGAACTGGCTTCTACGTCTCTCTGCTGACTGTGGGGAAATACTTGAAAAAGTATACCTTGCGGGTTCCTGCTGCAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558:ENSGALT00000015562:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGCACAAGAGCCAAGAAT
R:
TGAATTTGCAGCAGGAACCCG
Band lengths:
230-2163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]