GgaEX1035999 @ galGal4
Exon Skipping
Gene
ENSGALG00000009564 | METTL8
Description
methyltransferase like 8 [Source:HGNC Symbol;Acc:HGNC:25856]
Coordinates
chr7:17535101-17545673:+
Coord C1 exon
chr7:17535101-17535246
Coord A exon
chr7:17539023-17539123
Coord C2 exon
chr7:17545515-17545673
Length
101 bp
Sequences
Splice sites
3' ss Seq
TGTGATACTTATTTTTTTAGAGC
3' ss Score
7.91
5' ss Seq
GGGGTAATG
5' ss Score
4.85
Exon sequences
Seq C1 exon
GCTGTGTGACCAGAAGGGGTGGAACCTGGCTGCACCTCTCCTAGACCGCATTTAAGGGCTGACTGCCACTGAGGAAGGATCTCTCTCTCTCTCTCTCTTTGGAGATTGCTCCACTTGGAGTCTTTTTTGGTGAGCCCAGGACATAG
Seq A exon
AGCTGCTTCCTAAAAGTTGTCACCATCAACTGCATTTGCCAGAAGAGAAAGTGGACTTCTGGAGACAAGCTTGTGTTCTTTCCTCCAATGGCCCAAATGGG
Seq C2 exon
ATCTCCGAACAAAATGAATTTCATTACAAGGCTTTCTGCTTTGTGTCTGAGAAAAAAAAGCAATATGCAGCAAAGGTACCAGAGTAGTCGACGGCCAGCTGTTCCACTTGGATCACGGATTTTAACAGACCCTTCTAAAGTTTTTGAGCATAACATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009564_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.500 C2=0.537
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGACCAGAAGGGGTGG
R:
TGGCCGTCGACTACTCTGGTA
Band lengths:
242-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]