GgaEX1035998 @ galGal4
Exon Skipping
Gene
ENSGALG00000009564 | METTL8
Description
methyltransferase like 8 [Source:HGNC Symbol;Acc:HGNC:25856]
Coordinates
chr7:17535101-17545673:+
Coord C1 exon
chr7:17535101-17535246
Coord A exon
chr7:17538058-17538698
Coord C2 exon
chr7:17545515-17545673
Length
641 bp
Sequences
Splice sites
3' ss Seq
CTCTTATATTCCCTCCCCAGACT
3' ss Score
9.38
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GCTGTGTGACCAGAAGGGGTGGAACCTGGCTGCACCTCTCCTAGACCGCATTTAAGGGCTGACTGCCACTGAGGAAGGATCTCTCTCTCTCTCTCTCTTTGGAGATTGCTCCACTTGGAGTCTTTTTTGGTGAGCCCAGGACATAG
Seq A exon
ACTTGCTAGCGCGACCCAGCGGCTTCCGAAACGCGCGTCGCGTCCGCGCCGCCTTTACCTGGCAGAGGATGGTTCTCAGGAGCCCCATGTTCTTCCGGAGAGCCACGCCGGCGTCCCGGGCGTAAAACCCGCGGGCCCTGCGGCCGAGCAGGCGGCACACGTTGGGCGCCCGCGGCGCGGCCCTCCCTGCGACGGCGGGGCGCATCCTCGGCGCTCGGGCAGCGCGGGCCTTGCCGCTCGCCTGGTGACGCCACCGACGTCACGGGCCCGCGGCCGCTTCGGCCCGCCCGGCGCCAAGGGACGCGGAGCGGGGAAAGGCCGGAGCAGCCCCTCCAGGCCGGGGGGCGCACACCGGAACCACCCGGCCGGCGCGGGGAGCGGAGGGCCCGAAGCGCCTCGCCATTCGCGGCGGGGACGCGTTACCCGGCACGCCGCTGCTCGCCCCGCGGTCCGCCGGGTACTGTAGTTCTCCGGAGCGGAATTCGGCGGCGCACCCGCACCTCGCCTTCCGCACCGCGCCTGAGGGGCCGGGGCTGCCCGCAGGGGGCAGCGGAGGGGGGGCTCGCAGGGAGAGACCTCGGGGCTCCGAGTCCGCCGGCCGCTGCCGCTGTGACCTCCGGTCGCCGCACTGAGGGACTGAA
Seq C2 exon
ATCTCCGAACAAAATGAATTTCATTACAAGGCTTTCTGCTTTGTGTCTGAGAAAAAAAAGCAATATGCAGCAAAGGTACCAGAGTAGTCGACGGCCAGCTGTTCCACTTGGATCACGGATTTTAACAGACCCTTCTAAAGTTTTTGAGCATAACATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009564_MULTIEX1-1/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.537
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGACCAGAAGGGGTGG
R:
TGCTCAAAAACTTTAGAAGGGTCTGT
Band lengths:
295-936
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]