GgaEX0014137 @ galGal4
Exon Skipping
Gene
ENSGALG00000009558 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
Coordinates
chr7:17532733-17537021:-
Coord C1 exon
chr7:17536918-17537021
Coord A exon
chr7:17533940-17534079
Coord C2 exon
chr7:17532733-17532811
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATAACCTTTTTGTTACACAGGGG
3' ss Score
7.68
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GAAAGCACTAAATTCAAGAACGTTTGGACAACTCATTCTGCATCTCCTATTGCTTATGAAAGAGGAAGAATTTACTTAGACAACTACAGATGCTGTATCAGCAG
Seq A exon
GGGGAAATGCTACCAAATCCATCAGACTATAAACCTTCCCTTATAGTCTTAACAGTGCAGAACTGGCTTCTACGTCTCTCTGCTGACTGTGGGGAAATACTTGAAAAAGTATACCTTGCGGGTTCCTGCTGCAAATTCAG
Seq C2 exon
GTACCTAAGTTGGGATACTCCTCAAGAAGTAATGGTTGTGAAGTCAGCTCAGAATAAACTCCCTGCAGAAGCACGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACTAAATTCAAGAACGTTTGGAC
R:
TCTGCAGGGAGTTTATTCTGAGC
Band lengths:
170-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]