HsaEX1011045 @ hg38
Exon Skipping
Gene
ENSG00000115827 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
Coordinates
chr2:171443523-171449957:+
Coord C1 exon
chr2:171443523-171443613
Coord A exon
chr2:171448681-171448817
Coord C2 exon
chr2:171449879-171449957
Length
137 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCTTTTTTTTTTTAGGGA
3' ss Score
11.82
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
TGTTGCATCTGAGCCAAGAAAACTTTATGAAATGCCAAAATGTTCCAAATCAGAAAAAATAGAGGATGCTTTATTATGGGAATGCCCAGTG
Seq A exon
GGAGATATACTTCCCAATTCATCAGATTATAAGTCCTCACTCATAGCACTGACTGCTCATAATTGGCTACTTCGTATATCAGCAACTACGGGAAAAATCCTTGAGAAAATATATCTTGCACCTTATTGCAAATTCAG
Seq C2 exon
ATACTTGAGCTGGGACACTCCTCAAGAAGTCATTGCAGTTAAGTCAGCTCAGAACAGAGGCTCAGCAGTGGCCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115827-'9-16,'9-14,13-16
Average complexity
C1
Mappability confidence:
83%=57=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000436317fB1970
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCATCTGAGCCAAGAAA
R:
CCACTGCTGAGCCTCTGTTCT
Band lengths:
162-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains