GgaEX0014137 @ galGal3
Exon Skipping
Gene
ENSGALG00000009558 | DCAF17
Description
NA
Coordinates
chr7:19477958-19481331:-
Coord C1 exon
chr7:19481241-19481331
Coord A exon
chr7:19479169-19479308
Coord C2 exon
chr7:19477958-19478036
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATAACCTTTTTGTTACACAGGGG
3' ss Score
7.68
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
CATTGCACAAGAGCCAAGAATACTTTATCAAAAGCCAAAGTGTTCTGAGTCAGAAAAAATAGAAGATGCTTTATTATTGGAATGCCCACTG
Seq A exon
GGGGAAATGCTACCAAATCCATCAGACTATAAACCTTCCCTTATAGTCTTAACAGTGCAGAACTGGCTTCTACGTCTCTCTGCTGACTGTGGGGAAATACTTGAAAAAGTATACCTTGCGGGTTCCTGCTGCAAATTCAG
Seq C2 exon
GTACCTAAGTTGGGATACTCCTCAAGAAGTAATGGTTGTGAAGTCAGCTCAGAATAAACTCCCTGCAGAAGCACGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558-'2-4,'2-2,3-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGCACAAGAGCCAAGAAT
R:
TGCTTCTGCAGGGAGTTTATTCT
Band lengths:
164-304
Functional annotations
There are 0 annotated functions for this event