GgaEX0014135 @ galGal3
Exon Skipping
Gene
ENSGALG00000009558 | DCAF17
Description
NA
Coordinates
chr7:19479169-19482247:-
Coord C1 exon
chr7:19482144-19482247
Coord A exon
chr7:19481241-19481331
Coord C2 exon
chr7:19479169-19479308
Length
91 bp
Sequences
Splice sites
3' ss Seq
TAGCAATCATTTTCCTCCAGCAT
3' ss Score
3.94
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GAAAGCACTAAATTCAAGAACGTTTGGACAACTCATTCTGCATCTCCTATTGCTTATGAAAGAGGAAGAATTTACTTAGACAACTACAGATGCTGTATCAGCAG
Seq A exon
CATTGCACAAGAGCCAAGAATACTTTATCAAAAGCCAAAGTGTTCTGAGTCAGAAAAAATAGAAGATGCTTTATTATTGGAATGCCCACTG
Seq C2 exon
GGGGAAATGCTACCAAATCCATCAGACTATAAACCTTCCCTTATAGTCTTAACAGTGCAGAACTGGCTTCTACGTCTCTCTGCTGACTGTGGGGAAATACTTGAAAAAGTATACCTTGCGGGTTCCTGCTGCAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558-'1-2,'1-1,2-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTTGGACAACTCATTCTGCA
R:
TTTCCCCACAGTCAGCAGAGA
Band lengths:
182-273
Functional annotations
There are 0 annotated functions for this event