BtaEX6009080 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007683 | DCAF17
Description
DDB1- and CUL4-associated factor 17 [Source:RefSeq peptide;Acc:NP_001178418]
Coordinates
chr2:25068190-25069365:-
Coord C1 exon
chr2:25069351-25069365
Coord A exon
chr2:25069108-25069171
Coord C2 exon
chr2:25068190-25068201
Length
64 bp
Sequences
Splice sites
3' ss Seq
TAAGGGATACCAGATGTCAGGAG
3' ss Score
-10.2
5' ss Seq
AAAGTACTT
5' ss Score
1.73
Exon sequences
Seq C1 exon
TGTAACAATGGAAAA
Seq A exon
GAGATCCAAGTACCTACTAATTAGATGCTGTTTTAGGGAAGAATTTCTGTATTTTGGTTTGAAA
Seq C2 exon
CCATGTCCGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007683-'5-3,'5-2,6-3=AN
Average complexity
A_C3
Mappability confidence:
62%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]