HsaEX6016702 @ hg19
Exon Skipping
Gene
ENSG00000115827 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:25784]
Coordinates
chr2:172291593-172305327:+
Coord C1 exon
chr2:172291593-172291696
Coord A exon
chr2:172300033-172300123
Coord C2 exon
chr2:172305191-172305327
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTATTTTTCTTTTTTCCCAGTGT
3' ss Score
9.43
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GAAAGTACTAAATTTAAGAATGTCTGGACAACTCATTCCAGGTCACCTATAGCCTATGAGAGAGGAAGAATATATTTTGACAATTATCGGCGCTGTGTCAGCAG
Seq A exon
TGTTGCATCTGAGCCAAGAAAACTTTATGAAATGCCAAAATGTTCCAAATCAGAAAAAATAGAGGATGCTTTATTATGGGAATGCCCAGTG
Seq C2 exon
GGAGATATACTTCCCAATTCATCAGATTATAAGTCCTCACTCATAGCACTGACTGCTCATAATTGGCTACTTCGTATATCAGCAACTACGGGAAAAATCCTTGAGAAAATATATCTTGCACCTTATTGCAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115827-'3-10,'3-7,6-10=AN
Average complexity
A_C1
Mappability confidence:
92%=83=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAACTCATTCCAGGTCACC
R:
AGGATTTTTCCCGTAGTTGCTGA
Band lengths:
180-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)