HsaEX6016702 @ hg38
Exon Skipping
Gene
ENSG00000115827 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
Coordinates
chr2:171435083-171448817:+
Coord C1 exon
chr2:171435083-171435186
Coord A exon
chr2:171443523-171443613
Coord C2 exon
chr2:171448681-171448817
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTATTTTTCTTTTTTCCCAGTGT
3' ss Score
9.43
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GAAAGTACTAAATTTAAGAATGTCTGGACAACTCATTCCAGGTCACCTATAGCCTATGAGAGAGGAAGAATATATTTTGACAATTATCGGCGCTGTGTCAGCAG
Seq A exon
TGTTGCATCTGAGCCAAGAAAACTTTATGAAATGCCAAAATGTTCCAAATCAGAAAAAATAGAGGATGCTTTATTATGGGAATGCCCAGTG
Seq C2 exon
GGAGATATACTTCCCAATTCATCAGATTATAAGTCCTCACTCATAGCACTGACTGCTCATAATTGGCTACTTCGTATATCAGCAACTACGGGAAAAATCCTTGAGAAAATATATCTTGCACCTTATTGCAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115827-'5-14,'5-9,9-14
Average complexity
C1
Mappability confidence:
93%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000375255fB13454
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAACTCATTCCAGGTCACC
R:
AGGATTTTTCCCGTAGTTGCTGA
Band lengths:
180-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains