RnoEX6017370 @ rn6
Exon Skipping
Gene
ENSRNOG00000009403 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:RGD Symbol;Acc:1565551]
Coordinates
chr3:57651015-57656230:+
Coord C1 exon
chr3:57651015-57651105
Coord A exon
chr3:57654422-57654558
Coord C2 exon
chr3:57656152-57656230
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTTGTTTTCTAGGGA
3' ss Score
10.72
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
TGTTGCATCAGAGCCAAGAAAACTTTATGAAATGCCAAAATGTTCCAAATCAGAAAAAATTGAGGATGCTTTATTATGGGAATGCCCAGTG
Seq A exon
GGAGAAATACTTCCTGACCCGTCAGACTATAAATCTTCACTCATAGCACTGACTGCTCATAATTGGCTGCTTCGTATATCAGCAACTACAGGGGAAATCCTGGAGAAAATATACCTTGCTTCCTATTGCAAATTCAG
Seq C2 exon
GTACCTGAGCTGGGACACTCCTCAAGAGGTCATTGCAGTGAAGTCGGCTCAGAACAAAGGGTCTGCAGCAGCTCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009403-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCATCAGAGCCAAGAAA
R:
CTGCTGCAGACCCTTTGTTCT
Band lengths:
162-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]