DreEX6034820 @ danRer10
Exon Skipping
Gene
ENSDARG00000074909 | dcaf17
Description
ddb1 and cul4 associated factor 17 [Source:ZFIN;Acc:ZDB-GENE-071008-1]
Coordinates
chr9:3539677-3545268:-
Coord C1 exon
chr9:3545178-3545268
Coord A exon
chr9:3542820-3542956
Coord C2 exon
chr9:3539677-3539758
Length
137 bp
Sequences
Splice sites
3' ss Seq
TATAATTGGTGGTTTTGCAGGAA
3' ss Score
7.69
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
CCTTTTGCCGGAGCCAGAACTGCTGTATGAACTCCCCAGAACTCCCAAAACAGAGAAGATTGAAGACGCGTTATTGTGCCAGTGTCCTCTG
Seq A exon
GAAAATGTGCTACCTAATGCCTCAGAGCAGAAATCATGTCTGTTGACTCTGACGGCTAACAACTGGTTATATCTGTTGTCGGCGGACACTGGAGAAACACTGCAGCGGGTCTACCTCTCCTCTCGTTTCAAGTTCAG
Seq C2 exon
CAGATCGTTAGGTTGGGACTCTTCACAGGAGACATTTTACGTCAAATCCGTTCAATGCAAACAGACTGCTCTAGAACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074909-'3-4,'3-2,5-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTGCCGGAGCCAGAACTG
R:
CTGTCGTTCTAGAGCAGTCTGT
Band lengths:
172-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]