BtaINT0046897 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007683 | DCAF17
Description
DDB1- and CUL4-associated factor 17 [Source:RefSeq peptide;Acc:NP_001178418]
Coordinates
chr2:25063837-25064797:-
Coord C1 exon
chr2:25064661-25064797
Coord A exon
chr2:25063916-25064660
Coord C2 exon
chr2:25063837-25063915
Length
745 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTA
5' ss Score
7.26
3' ss Seq
TCTCTTTATTCTTTTAAAAGGTA
3' ss Score
8.71
Exon sequences
Seq C1 exon
GGAGAAATGCTTCCCAGTCCATCAGATTATAAATCTTCACTCATAGCACTGACTGCTCATAATTGGCTGCTTCGTATATCAGCAACTACAGGAAAAGTCCTTGAGAAAATATATCTTGCTTCATATTGCAAATTCAG
Seq A exon
GTATTAACTGTGACTCTGTTGTTTAAAATTTGATTATGAAAAATTGAGACTTATGGCCTAGGATATTTCAAGATTTTTTTTTTAAGTTTTCCATTGTATATGTGGATCTCAGTTATAAATCTATTTATCTCTCCTCATGACTGCTTTTGAAGATCTAAGGATGGAGACCCTTTGTCATTTATCTTTGTATTCCTCATAAGTAACTAACCTCTAGTAGTTGTCAGATACCCTTTTTAAAAAAATTTACTTTTTACAAATAGTATTTTTTATGTGGGATGTATTTTTTTGGTAGATTTTTCTGAAAGCTAGTCTGTTGCAGTTAAGTTACCTGCCTAGTATAATCTAAGAACTGTTACTTATAAACTCAGAGTTTTATAAATTAGATGTAAATTTTTGGAATGAATATAAGCATGCAAAATGTGAATGTAATATTTTTAATGTTTTTTGTAACTTCTTTTTTACATCAGGAATGGTTTTTCGTTTTCTAAGTTTTGAATATTGACAGATCAAATACAATTTTCATTCACTGAGACTCCAGAAGGATTAAAATTATATATATATATAAACAAATAAATGCATATGAGGATCTTCAGGGAATTCTTTTAATTGTTTATTTTTTAAAATAAGTTACTTTTATAATTTAAGTAACTGGAAAACTGTTCACTTATAAAATATCTATTATATTTTGATTTGAAGTATAAGGACCTGACCTAAACGAGTAAACTTCTCTTTATTCTTTTAAAAG
Seq C2 exon
GTATTTGAGCTGGGACACTCCTCAAGAAGTCATTGCTGTCAAGTCAGCTCAGAACAAAAGTTCAACATTGGCCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007683:ENSBTAT00000010105:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAATGCTTCCCAGTCCA
R:
CTGTCGGGCCAATGTTGAACT
Band lengths:
216-961
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]