HsaINT0045234 @ hg19
Intron Retention
Gene
ENSG00000115827 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:25784]
Coordinates
chr2:172305191-172306467:+
Coord C1 exon
chr2:172305191-172305327
Coord A exon
chr2:172305328-172306388
Coord C2 exon
chr2:172306389-172306467
Length
1061 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TCTCTTCATTCTTTTAAAAGATA
3' ss Score
7.39
Exon sequences
Seq C1 exon
GGAGATATACTTCCCAATTCATCAGATTATAAGTCCTCACTCATAGCACTGACTGCTCATAATTGGCTACTTCGTATATCAGCAACTACGGGAAAAATCCTTGAGAAAATATATCTTGCACCTTATTGCAAATTCAG
Seq A exon
GTATTTACTGTGAATTTATTATTCAAGATTTTATTTTAAAAATTTGAAACCTGTGGCCCATGAAATTTCAAGCCTTTTTTCCCTGTCAGTTTTCTAATCCATTACCAGATCTCAATTAATAAACCTATTTTCTTTTTCTCCCCTCATGACTACATTTAGAGGTCTGAGTATAGAGACCCTCTATCATTTGTCTTTTTTTTTTCTTTTTTAAGACAAGGTCTTGCTCTGTCTCCCAGGCTGGAGTGCAGTGGCGTGATCTCTGCTTACTGCAACCTCCACCTACCAGGTTCAAGCGATTCTCCTGACTCAGCCTTCCCAGTAGCTGGGATTTTGGGTGTGCACCCCATGCCCAGCTACTTTTTGTATTTTTGGTAGAGCTGAGGTTTCCCTATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCTGCCCACCTCAGCCTCCTAAAGTTCTGGGATTACAGGCGTGAGCCATCGTGCCCAGCTGTCATTTATCTTTGTATCCCTAATAAGTAACTAACCTGTAATAGTTTAAATAAACTTAAAAAAAAAAATTCCCTGTATTCTACAAATAGTATTTTCTATGTAAGATGCTCTTTATGGTAGATTTTCCTGAAGGCTAGTCTGTTTCAGTTAAATTGTCTGCTGTGTACAATCCAAGAACTGTTATTTTAACTATTAGTTTTATAAATTAGATGTAAATGGAGTGAATATGTTCATGGAATGTGTGAAAGTAACATTTTTAGTGCTTTTTATACTTCCATTTTAAAGTAGAAATGATTATTTTGTTTTCTAAGTTTTGAATACTCTTAGATCGAAAACAATTTTTATTCACCAATGCTCTAGAAAGATTAAAATTATGTATGTATTTAAATAGGGATATGTCCATATGGGGATATAGAGGAAATTTTTTTAGCTATTTATTTTTTAAAATAGATCACTTTGCTTTTATAATTTAAATAACTAAAAAATAGTTTACTTATAAAATATAATATTTTGGTTTTAAGTATAAGGAAACTGACCCAAATAAATAAACTTCTCTTCATTCTTTTAAAAG
Seq C2 exon
ATACTTGAGCTGGGACACTCCTCAAGAAGTCATTGCAGTTAAGTCAGCTCAGAACAGAGGCTCAGCAGTGGCCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115827-DCAF17:NR_028482:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATATACTTCCCAATTCATCAGA
R:
CACTGCTGAGCCTCTGTTCTG
Band lengths:
207-1268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)