HsaINT0045234 @ hg38
Intron Retention
Gene
ENSG00000115827 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
Coordinates
chr2:171448681-171449957:+
Coord C1 exon
chr2:171448681-171448817
Coord A exon
chr2:171448818-171449878
Coord C2 exon
chr2:171449879-171449957
Length
1061 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TCTCTTCATTCTTTTAAAAGATA
3' ss Score
7.39
Exon sequences
Seq C1 exon
GGAGATATACTTCCCAATTCATCAGATTATAAGTCCTCACTCATAGCACTGACTGCTCATAATTGGCTACTTCGTATATCAGCAACTACGGGAAAAATCCTTGAGAAAATATATCTTGCACCTTATTGCAAATTCAG
Seq A exon
GTATTTACTGTGAATTTATTATTCAAGATTTTATTTTAAAAATTTGAAACCTGTGGCCCATGAAATTTCAAGCCTTTTTTCCCTGTCAGTTTTCTAATCCATTACCAGATCTCAATTAATAAACCTATTTTCTTTTTCTCCCCTCATGACTACATTTAGAGGTCTGAGTATAGAGACCCTCTATCATTTGTCTTTTTTTTTTCTTTTTTAAGACAAGGTCTTGCTCTGTCTCCCAGGCTGGAGTGCAGTGGCGTGATCTCTGCTTACTGCAACCTCCACCTACCAGGTTCAAGCGATTCTCCTGACTCAGCCTTCCCAGTAGCTGGGATTTTGGGTGTGCACCCCATGCCCAGCTACTTTTTGTATTTTTGGTAGAGCTGAGGTTTCCCTATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCTGCCCACCTCAGCCTCCTAAAGTTCTGGGATTACAGGCGTGAGCCATCGTGCCCAGCTGTCATTTATCTTTGTATCCCTAATAAGTAACTAACCTGTAATAGTTTAAATAAACTTAAAAAAAAAAATTCCCTGTATTCTACAAATAGTATTTTCTATGTAAGATGCTCTTTATGGTAGATTTTCCTGAAGGCTAGTCTGTTTCAGTTAAATTGTCTGCTGTGTACAATCCAAGAACTGTTATTTTAACTATTAGTTTTATAAATTAGATGTAAATGGAGTGAATATGTTCATGGAATGTGTGAAAGTAACATTTTTAGTGCTTTTTATACTTCCATTTTAAAGTAGAAATGATTATTTTGTTTTCTAAGTTTTGAATACTCTTAGATCGAAAACAATTTTTATTCACCAATGCTCTAGAAAGATTAAAATTATGTATGTATTTAAATAGGGATATGTCCATATGGGGATATAGAGGAAATTTTTTTAGCTATTTATTTTTTAAAATAGATCACTTTGCTTTTATAATTTAAATAACTAAAAAATAGTTTACTTATAAAATATAATATTTTGGTTTTAAGTATAAGGAAACTGACCCAAATAAATAAACTTCTCTTCATTCTTTTAAAAG
Seq C2 exon
ATACTTGAGCTGGGACACTCCTCAAGAAGTCATTGCAGTTAAGTCAGCTCAGAACAGAGGCTCAGCAGTGGCCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115827:ENST00000375255:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATATACTTCCCAATTCATCAGA
R:
CACTGCTGAGCCTCTGTTCTG
Band lengths:
207-1268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development