BtaINT0047623 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003530 | DDX31
Description
Bos taurus DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 (DDX31), mRNA. [Source:RefSeq mRNA;Acc:NM_001101886]
Coordinates
chr11:102762961-102764000:-
Coord C1 exon
chr11:102763930-102764000
Coord A exon
chr11:102763026-102763929
Coord C2 exon
chr11:102762961-102763025
Length
904 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CTCTTGTCCTCTTTTAAAAGGTA
3' ss Score
9.3
Exon sequences
Seq C1 exon
CGTTCAGAAGCAGAGCATCCCCGTGTTGCTGGAAGGCAGAGATGCCCTCGTGCGATCCCAGACGGGCTCAG
Seq A exon
GTCAGTCATCACTTGATTTCTGCCCTTCCTCCACGGTCATGTGGTGAGCTGTCTGTTGATGGTGGTGGCTGCTTTGTTTGGTGGGGGGAGGGGAGGCCGTGCTTGCTTCTGATCAGAGCCCTGAAAGGAAGGGGATGATCAATGGGACCACAATCAGGAATGATCAGAAAGGAGTCAGGTTCCACAGTCATTTCTCAGCGCCCCTCCCAGGGCTCTACCTGGTCCCACCATCTATGGCTAGAGCCGTCCATCTTCACTCCAGTGGCAATGAATATTTTTTTCTGGTGTTGAAACACTCTTGCCATGAGCACGCACTGATCAGATGCCAGTTGTTGTGCTCAATCACGGAACACTGGTTTTGTTCCAGAACAGCCTGGAAGGGCTTTTCTGACCTCTTGTGCCTGTAAGAGCAAGTCAGCTATCCTTTCCTCCCCCGCTCAGCCACTGTCCAGATGGGCGGAAGCCCAAGGGTTTTGCCATCCATGGTTTCTCCTTGGATTCTGGAGGCCAGCTCTGGGCTTCCAACTGGCTCCTGACCGTGAAAGCACCACAGATGACACTTCTGCCTTCAGAAGCGCCTTTGAGAGGTTGAAGGTGACCCCGGGGAGGGGAGCTTCTCTAGTTCCTAGGGACATTCACTGAGCTGAGCTTCTGTGAGACTTGGGGAGAGTATCATTGTCTCCTTTGCTAGATGTTAAAGGAGCGAAGCTGCAGGTTTATTAGAAGCACTGCATTCACAGAGCAGAACTAGGAGCTGTGACAGACAGGTGACTTCCGTTTTCCCCTGAATGTGAGTGCACTTTTCTATCTCCAGACTTCAGGGCGGTGCCAGTTTCCTTTACTATTTTTGGTTTTCTGATGTCCTCAGACTCCGGTTTTAATTCCTCTTGTCCTCTTTTAAAAG
Seq C2 exon
GTAAAACTCTTGCCTATTGCATCCCTGTGGTCCAGTCTCTTCAAGCAATGCAATCCAAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003530:ENSBTAT00000042916:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(13.5=100)
A:
NA
C2:
PF0027024=DEAD=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development