GgaINT0125433 @ galGal3
Intron Retention
Gene
ENSGALG00000003534 | F1NM06_CHICK
Description
NA
Coordinates
chr17:7272315-7273051:-
Coord C1 exon
chr17:7272981-7273051
Coord A exon
chr17:7272380-7272980
Coord C2 exon
chr17:7272315-7272379
Length
601 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
ATTTTCTTCCTTTTATGAAGGTA
3' ss Score
7.43
Exon sequences
Seq C1 exon
TGTTCAGAAGCAAACAATTCCTGTGCTCCTGCAAGGCAAAGATGCTCTGGTGAGATCTCAGACTGGTTCAG
Seq A exon
GTCAGTGTTTAATTGCCAGTTTCCATTCCTAGGGCATTTTAAGTTGGATCTGAAATAAAGAACCAAAACATCATGTTCCTAGTACAGCTTATGAGAGTGACAGGCTCAGAACCCTGGGGTGGGACTGCTGTGGCACAGACAGATGCTGTGCAAACTTCTGTAATGACACAGTGCACAGTGGTGGGACTGAATGTTGATGCGCAGCTGCCAGCTATCGCACATGGGCCAGTTCCAAGGCTTGTGCTGGGGATGCAAGTCCAGGAGGCCAGTGGAGCTAAGCAGCACACTCTCATCAAATAAACTTATGTGCTTGCTCTACAATTAACTGTCTTGATGTCACATTTTCTTGAGCGGATGGAATTATTTATTTAGATGGATCTTAGATGGATTCTGCTTCCTCTCCTTTTTAATTTAACCCCTGAGTGTATGATCTACCAATCTTCGTTATTGGAAACATTCTACTTAATTAAGACTTTTCCAAGTTCTGACCTCAGTTTAAGAGTAGTGGGGTGAATTATACTTCCATTTTCTGGAGTACCACAATTTCCTTTTTTAATTTTTTTTTCTTGGATACTCTTCCAATTTTCTTCCTTTTATGAAG
Seq C2 exon
GTAAAACTCTTGCCTATGGAATTCCACTTGTACAGTCCTTGCAAGGAATGCAATCCAAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003534:ENSGALT00000005588:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(13.5=100)
A:
NA
C2:
PF0027024=DEAD=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]