RnoINT0046006 @ rn6
Intron Retention
Gene
ENSRNOG00000013040 | Ddx31
Description
DEAD-box helicase 31 [Source:RGD Symbol;Acc:1304895]
Coordinates
chr3:7430092-7430987:+
Coord C1 exon
chr3:7430092-7430162
Coord A exon
chr3:7430163-7430922
Coord C2 exon
chr3:7430923-7430987
Length
760 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
ATGTTACTCTCTTTTGAAAGGTA
3' ss Score
7.96
Exon sequences
Seq C1 exon
TGTCCAGAAGCAGAGTATCCCAGTGCTGCTGGAAGGCAGAGATGCCCTTGTGCGCTCGCAGACGGGCTCAG
Seq A exon
GTCAGTTGCTGCTTGTTTACCTTGCCATTTATCTTGAGGCACCATGGTTACATGCTGGCCTCTTCAGGAAGGTGTTTTGTGGTGGCAACATCTGACTTGTCTGGGAAAGGGCAGCCATGTTCGCTTTTGTCGGGAGACCTGTGTTAAGTTGAAGGAAGGTAGTGATGGGCTGTGGTCACTGGTGATGAGGGAGTATTCACAGTTGAGCTCTGCTGCTTCCTGTGTGCCTGCTGCCAGTGGTCAGCCTTCACTCTGGATGGATTGACAGTTTATGTCTTGAAAGCAGTTCCAGCCTGAACACAGTAGTGTCAGGGATAGACCACTTTCTACCTGGTCTGTACTTCTGCCCCACTTTTGCCTTCTTGCAAGCTTAGCCATGGTGAGAAGTTCAAAGCTTCCCTTTAGTCTTTCTGACTTCAGAGACTGGCTTGGATTCATACCTGACACACCAGCACCACAGAGGCCATTTAGCTGAGAGAGCGAGAACTTGGAAATAGCCGTTTCTTAGCTTTCACGTGCAACTGTCAGGCTAGCTTCTATCAAATGTGAAAGGCATCATCCCTCCCTTATAGATAACCTAAGGAGCTGAAACTTCAGAGGTTTTGGAGTACTGATTACAAAGCAAAGTTGGGAGTCATGACAGATGCAGTGCCTCGTAGATATAGAACACACAGTTCAGCTTCTCCCAGATTTAGCATTATTTACAGCTGTGTGCGTCCCGGCTGTGTGCATCCCAGCTGATGTTACTCTCTTTTGAAAG
Seq C2 exon
GTAAAACTCTTGCCTATTGCATCCCTGTGGTCCAGTCTCTTCAAGCACTGACATCAAAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013040:ENSRNOT00000064323:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(13.5=100)
A:
NA
C2:
PF0027024=DEAD=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]