BtaINT0048090 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020172 | DENND2D
Description
DENN/MADD domain containing 2D [Source:HGNC Symbol;Acc:HGNC:26192]
Coordinates
chr3:32324230-32325060:+
Coord C1 exon
chr3:32324230-32324299
Coord A exon
chr3:32324300-32324982
Coord C2 exon
chr3:32324983-32325060
Length
683 bp
Sequences
Splice sites
5' ss Seq
TTGGTCTGT
5' ss Score
0.67
3' ss Seq
GCCTGTCTGTCCCTCCCCAGCCC
3' ss Score
10.12
Exon sequences
Seq C1 exon
GGAGACCTTCTCGTTCGTTCTGACCAATGTGGACGGGAGCAGGAAGATTGGATATTGCAGGCGTCTCTTG
Seq A exon
GTCTGTGCAGCTCAGAACTGCCCCCTCCTCTCTGCATCCTATTCTCCCCCACAGCTGGGGTTGCTCCAGCCTCAGTAGCAAAAGCCAAGGCTCCTTGGCAGAGGTGGTTGTAAAGAGAGAGCACAGCCCAGCACCTGCTGCCATATTAGTGCCCTGTGCAACCTCACAAGAATGGAGACACACACCCCTCCTCACCTACAGGGCACCTTTGCTGCTGGGGTTGGGTCTTTACTCTGCCCAGCTTTCAACCATTCCCTTCTGTGGGATGCTTCATTCTAATCTGCTCTCCACCATCTCTATCTAGGCCTTGTTGCCTTGGCCCCTGGGCCCTCCCAGAGCCTAGCTTGGGATTGGGACCATGAGGTTCAATCCTTGGGTCTCCCCAAGTCACTTTTATAGCACACTGTCCCTAGCTGTTTCATGTCTCTACAACACACTTGCTCCCTCCTTGTCAACCCCTTGAGGGTGTTGGTGCTAACAGAGGCAGTGCTTGCCCGTAAGCCAACCAGCCCCCTCAAGGCCATGGTCTTTTGGTTTCTGTGACTGCTCTGGCCTTCCCAGCTGCCTGTCCCAGGAGTGGGATTCCCCCAGCCCAGCCCCCAGCCCTGTGCCCCACCAACCCCAGTTGGGCAGAGGCCTTGGAGAGGCTGCGACACTGAAGGAGCCTGTCTGTCCCTCCCCAG
Seq C2 exon
CCCGACGGCCATGGTCCTCGCCTCCCCAGGGTGTACTGCATCATCAGCTGCATCGGCTGCTTCGGCTTGTTCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020172:ENSBTAT00000026865:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(32.4=100)
A:
NA
C2:
PF0214116=DENN=PU(10.3=73.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]