RnoINT0046501 @ rn6
Intron Retention
Gene
ENSRNOG00000017680 | Dennd2d
Description
DENN domain containing 2D [Source:RGD Symbol;Acc:1305120]
Coordinates
chr2:209103901-209105630:+
Coord C1 exon
chr2:209103901-209103970
Coord A exon
chr2:209103971-209105552
Coord C2 exon
chr2:209105553-209105630
Length
1582 bp
Sequences
Splice sites
5' ss Seq
CTGGTTGGT
5' ss Score
4.67
3' ss Seq
AAATTCTTGTCCCTCCCCAGCCT
3' ss Score
6.5
Exon sequences
Seq C1 exon
GGAGACCTTCTCATTTGTCCTGACCAATGTGGATGGGAGCAGGAAGATCGGATACTGCAGGCGCCTCCTG
Seq A exon
GTTGGTGCTACTCAGAACCGCCCCTTCCTCCCCTCAGACCGTTCAGCTCCATGGCTGGGCTTGGCGAAGCCTCAGTTTCAAAAGCTCAGGCTCGTTGGGAGTGGTGCTTATAGGGAGAGTACACGGCAGCATGTGTCCCTTCTGGAATCCCACAAAAGCAAGGACATGCTGACCCTCCCCTCTGCTGCCACTGGGCTCTGGCCAGTGCTCGCCCAGCTCCGCAGTTTTATACACAGTGAGAGGCTCCAGTTGTACCCTCTTGTAGTCTTTTGTACCCAGGCCTGTTTGCGTTGATCCATGGAGCCTCCCAGACACTCTGAGATGTGAATGATGAGGTTTAATTCTTGGCTTTCAGGACAAGGATTCTCTCTCTGGACACCTTTACAACCCTTTCCTTTCTAGACATTTCCTCGTGGCTAAGACAAACTTGTTTTTGTTCTCACTGAACTTAAGCTCGTGTTGGCAATGAGTCAGTGTTTGCCTTTGGGTTTCTAACCCCGGAAGGCTGCCACTACCACCTCCTTCCTCTTTCTCCTCCTCCTCTCGCTCTTCTTCCTCCTCTTCTTCTCAGTGTATACCCATCATATAAAGAAATAGGCCTCATTTTTATGTGTAATCCATGTACTTGAGTCATATTTGCTACTCCCACCACACCAGTTCATTTTCTCTTCCCAAACACCTCTCTAATTTCATGTTTTTGATCCTTTTTCTTTATTTTTCAAAGTGTATGAGTGTTTGATTGCATGTATGTAAGTGCACTGTGTGCATACCTGTTGCCCATGGAAAAAAAAGAATAAGAAGCTAGATACTCTGGAACTGGAGTTAGGTGCAAATTGTTGGGAACTGCAGTGCAGGTGCTGGGACCCAAACCTGGGTCATCTGCAAAAGCAGCAAATGTTTTTAACCAATGAGCCATCTCCCCAGCCCTCTTGTCTCTCTTTTTAAAGCTTATTTTATTTATAATTATATGTATATATGTGTGTGTGTGTGAGTCGGTGGGATATATGCATGTGTGTTTGTACCTTATGAGGACAAAGAAGGGACATCCCCTGAACTGGAGTAAAAGATGGCTGTGAGCCATCCAGTGTGGGTGCTAGGAACTGAATTCAAATTCTCTGGTGAGCAATATGTGCTTGTAACCACTGGGGCACATGTCCAGCCCCTCACGTCTTTTGTTTATGTCTTATTTTTCTAAAATCCAAATCCTGCATATGAGATAGAAAATACATTCTGTGCCTATTTTCTTTTGCCAATTGTATCCACTTGTCATAATTTCATTCTTATTAGCTGAATAATACTCCACCTTGTTTATGTGACACACTATCTTTATCTTTTCATTTGTTGAAAGACGTCTGAACTGGTTATACAGTGTGGCAGTTGTAAGCTTTGTCTTTTGACTTTGGTGACTGTTTTGACCCTTCTCCGGTCTGTTCCATGAATAAAACCTCTGTACAGACCTTTCTCTATCCAAACCCATTGACCAGTCCCGTCTGCAGTACTCTACCTTTGGTCTCATTGGTCTCAAATGGGAGAAACCCTTGTGGAGGCTGCAGCCCTGAAGGAAATTCTTGTCCCTCCCCAG
Seq C2 exon
CCTGCTGGTCCTGGTCCTCGCCTTCCAAAAGTATACTGCATCATCAGCTGCATCGGCTGCTTCGGCTTGTTCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017680:ENSRNOT00000023807:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(32.4=100)
A:
NA
C2:
PF0214116=DENN=PU(10.3=73.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]