BtaINT0048638 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:101950941-101959986:-
Coord C1 exon
chr4:101959942-101959986
Coord A exon
chr4:101951011-101959941
Coord C2 exon
chr4:101950941-101951010
Length
8931 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
ATGTGTGTGTGTCTTTCCAGGAC
3' ss Score
12.08
Exon sequences
Seq C1 exon
GACCTGCAGTCAGTTTCTTCTGGCTCCCAGAGAGTTCATTACCAG
Seq A exon
GTAACATATAATTGACTCTCCTTGTTTCTTACCTTCTGGCCAAAAGAAGTCCATTTTTCAATTAATGTCTCATTTGAATTAGATTCCACATCTTCCTTGAGGGGTAGAATTCACTCCAAGAGCCAAGTTGAAGCTGGCATTTTGATTCTTGTGCATTTTCCTGAAAAATGGACAATTCTAGTCTAGCACAAATTTGGGCTGTGGCTGTCTTCCCAGATCTTTTAGGGATTATAAAATGAAGTGCTTTTAGTGACAAATACTAGAAAGTGCAACTCAAACTAGCTTGATGGGGAGTCTTTTGCTTTACCTCACCACAAAGTTCAGATCCAGGGTGAATTTTGTGTACCATTTGACCACGGTTCAAACTCCATTTTTCTGTTGGTTTTTCTGCTCTGTTCTCTTTTCTGTGAAATTTCACCCCTGGACAAGATGTTTTCCTGATCCAAGATGGCTGGCAGGAGCAACCAGGAGTTGGGTTTCTCGTTTACAAACAAGAGAGTAAATTCTGGGCTTCCGCAACCATCAAACCAGCTTTCCAAAATGCAATCTGATTGTCCCATCCTGGTTTCATAGACAGAATCTAATAAACCCAGCCTGCCTCTCTCTAGTAACCCACCTCCAGTCCATGGGAGAGCACTCAGCTGCCTTTGCCCCAACATTCCCTGGGAGGGCAGTCTCTCCCTCACTTTCCCATCTCTGCTGTGTAGCACAGGCCTCTGCAAGCCATCCTCTTCCCGTTAGGTTTCCCAGGCGTGATTCAGACACCAGTGCACAGCATCACACCAAATTGTAAGGGGTGCATGCAAAGTAGCTCGCAGTTGTCCCACAAAAGCCCTTATCCCTGAGAAGCCCAGTACCCTTGCCAACTGGGAGGGGTGTGTGGAAGACACAGGATGCCAGTGACACCTTCCAAATAAATCTCCTAGACCCTATATACTTCCATGTGGGAGAAGCACTTAAAATGTCTAAATCGCAATTCCTGGTAGCATCTCATTCTGGGTTTTGGTGTCTATTATACTACCCCTGAAACTGCTGGTTAAACGTCATTTTGCAAAAACAATTTAAAGACCCCTGTGCTTTGTAGCCTCCAGGTAACTTTCTTCCTCAGGAGGTCAATAGCTGTGCCCTCAGTCAAAGCAGCCTAATTATCCTGAGGCTGGATGACAGAAGTGGCCCTGGTGTTCTTATTTCTTTGTCTGTTTATTTCTCAGAGAAAGTACCCCACTATCCCAGAATCCTGCCCTCCATCTGGCTCCAATAGAAAGGACAAAAATTCACTTAGATGTGTTTACTATGAGAAAATAAATTCTACTTCTGGGACTGTTTTTTTTTTTTTTTTTAATGCCAACCCTTAGAAGGCAAATTTCACTGTATTTTCTAGATAGAGCACAACCTTTTTTGTATCCATTATTTGCATATCTACCTAGAGTCACTACCTAGATATCATTTTATTTTTTAAGTGTTTTTAAAGACGAGTTGATTTCTACCCTTTAAGGATTGGCACTGCTAGCCATAGATTTCAAGTCTTTTTTTAGAATTTTTGATTGTTACACATGGTATTTTAAACCTTTGCAGCTTTATCGAAGCATCCCAAACATTTCCTCTAATTAGTTTTATGATGCATTTATTTATTATCCTGACTTATTCAATGTAGTCATTTTGGCATGAGAGTTTTGATATATGGATATTTTGTACTGTGTTTTCTTTATGCCGTGTTTCTACAAGTCTGCAGATAGCAGGGGATGGTTGAGACTCTAAAATGTGATAAGGACATTTATTTTATTGATTATTTGTTCATAATAACCTACAGAAGGATTAATGGTACTTATCTGTGTCAAAATCTTCCTGTTTTTGTTGTTTGTTTGCAGTCAGGTCAAACCCTGGTGTCAAAACTTCTGCATTATAAATGTCACTTCCAAAAGTTTGTGCACTGACCAGATAGGATGACCAATTCAACGATCAAAGATGAGTGTCAGGGTGTTACTTTGCACCACATACTTCCTTGAAGAGTTATAAAAATCAGGAGCCATTTGGGTATTAAGAGAAGGCTGGAGTAAGGTTGTCTAGGGACGCCCAGAATCTGCTCATTAAATAGGTAGTTTAACTGAGGGGAAATGATGTTTGAACTAACATGGCTGGAGAGTAGGGAGAAGGTGGTGAGGAAATTGCCTAAGCAGAGCATCGGAAAGCTGGTTAAGACAAGGAGTAGGGGGATATAAAAACATTCTCATTTGGCTGAGATTTACAAGCACAGACAGACAGGACTAGGAATGAGTTGGAGGGAGGGTGAATAAAGAGTTCTCTTTTAGCTGCAATGATTTTGATCTGCCTATTAGATGCAAGAGGTTTTGATGAGTAGAAAATTGGATGTATGGCTTTCAAAGCTCATTGAAAAATTCATTCCTCAACACAGAAATTTGAGAGTTGTTAGCAAAAGCAGCAGCAGCAAAGGAATGCTACTTCATTGAACCTATCAGGCTAGACATCACTTAGGGAGAGTTTTCATAAAGAAAAGAGCTCAATGTCATATGTGTCTAGTGAGTGGTCAAGAAGAACACAAGGTTAAGAGAACAATCAGTCAGTAAGAGTCATGGAGACAGATGAGTGGCTGGATAGCTGGAAATCAAGGAGAAGATGGTATCAGGAAAGCCAGAACTGAAACGTATTTCAAAAAAGGCAGAAGTGATGAAATAAGTCAAATGCTAAGGGGAGGCTGAGATGACATAGATTGATTCCAATATATTCCTGTGCATATAAAATACATGGGCTAGAGGTACCATTCATTTTATCCAGAAAGTGACCAAACCAACTGGCAGGAAATTTAATACTAGATCTTTTGTTTCCTAAAGCAGAAACTGGTAATATCAGCATCTCTGGTCTTTGATTAGCGAGTGATTAGGAGAAAGACCTGTAAGGTGAACAACTGAAATGCTTTCTAATGACCTTTCTTATGTATGAGATGGAAGTAAATGTACTTAAGAATTAACTTTCATGGAATGAATAAACATCAGTAAGTTTGAAAACTTGCAAAATTCCTGTAGGCTCACTAACTTGCAGCTGGGATTTTAGCTGACTGTTTCCTAAGCCTAGAAAAAAACTCAAGAGAAAAACCAGGCTTTGGAAAGGTGTGAAGTCCCCGAGACACCTTATTAATGAGCTGGATGGCAGTTCCTAGCCATTGAAGCAATGAAGTGCTTTGGTTTCTTCCCTTCCCAAATTCATACTGAAATGCCAACAAAGCCCTAAGCCTCAAAATGACACCTTGTATTAACCTGACAAGGCCTTACAAGTTATACAAGAATATATTGGATATTTGTAGCCTGCTGAAAATTCCTGCCTGTATCATCTCTGAGGTCTAAACACAAAGCCCACCCCCCACCAATCCTAATGCAGCTCACGTAACCTGTAACTGGTAAAGTTATAACTTGATAAACAAAATGCATTGTGCTAGCAGATTCAGGTATTCCTGAGCTTGGCAGATAAGCTAGAATTCATAGGCAAATTGAACTTTGTCTACCTATTTAATAAGATTCATCTTGAGGCCTCCTACTGTGAAGTGATTTCTTCTCTGCTCCCTCCCTGGACTTAATTATATCTCTTTTAAACTCCAAGTTGTAAGGTTACTAAGGAATAGAGGCAGATTCAAACATCCTAGTGATTGTCAGCTGAGGGAGATTTGTCCCTCATATGGGACATGAGATTAAAAGACGGTTGCTCCTTGGAAGACCAACCCAGACAGCATATTAAAAAGCAGAGACATTACTTTGCCAACAGAGGTCTGTCTAGTCGAAGCTATGGTTTTTCCAGGAGTCATGTATGGATATAAGAGTTGTACCGTAAAGAAAGCTGAGCATGGAAGAATTGGTGCTTTTGAATTGTGGTGTTAGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCAAACCAGTCAATCATAAAAGAAATCAGTTCTGAATATTCACTGGAAGGACTGATGTTGAAGCTGAAGCTCCAATACTTTGGCCTACTGATGGGGAGAACTGATTCATTTGAAAAGACCCTGATGCTGAGAAAGATTGAAGGCAGAAGAAGGGGATGACAGAGGATGAGATGGCATCACCAACACTATGGACATGAGTTTGAACAAGCTCTGGGAGTTGTTAATGGACAGGAAAGCCTGGCATGGTAAAGTCCATGGGGTTGCAAAGAATTGAACATGACTGAGCAACTGAACTGATAGGACAGTTGGGCAATTTGAATATTTTTGTGTGTCATGACTAGGGGACATGGAAGTATCAGAATCTACTGAGTAGAGGTCAAGGAAGCTGCGAAACATGCCACAATACACAGGGCAGTTCCCTGCCACAGAATTATCCATCCCCAAATGTCAGTTGTGAGGGTGTGAGAAGCCCTGAGTCATTCTGATGGCTCTCAGGACATGTGGGGACAAGGCCAATGACAGTGCTAGATGAAAAAAGTGGAAAGAGAGGGAAAGAGGAACAGCAAGAGACCAAGAGGTAAAGGAGAGTAGAAAGAGCTATCTATGGATACGCTGGCCCAATGGAACCAGGGACAGTTAGGGGTTTTGTAGACACTCAGGGTTTCACCATATGTATGGGTGAAGTTGGCACACAGAAGTGTGTTTTCAAACTATTATGAGCTAATAATTTGAGGTTTTAATAAATACAACGTGTGTGTGTGTGTGCTCAGTCACTTTAGTCGTGTCTGACACTTTGTGACCCCACGGACTATGGCCTGCCAGGCTCCTCTGTCCATGGGAATCTCCAAGCAAGAATACTGGACTGGGTTGCCATGCCCTCCTCCAGTGAATCTTCCTGACTCAGGAATCAAACTAACATCTCCTGCATTGGCAGGCAGGTTCTTTAGCGCCACCTGAGAAGTCCTAATAAATACAATAGGACTCAATAATAGGTGAAAATGGATCTGGTGATTCCTCCTCTTTAAGAATCAATTTAGTTAGAATAACTCCAGAATAGTTGGAATATTTCACTATAGATGTAATAATTTCAAAAAGTTCTTTCATCCTTTAGAGCCTCTGAGCCACCAGGGAAGACCCCATAAGAAAACACTCTTGGTCAAATCTGACTCTATAGCCATTTGTTCATCCTCTGATCTCTTTTTTTTACATGCCTAATCTTCTCCTAGAGGATAGGTTTGTTCTGTAGTGCATCGGAGCTCTGTCTAGTGCTGGGCAAACAGCATGTGTCAACAAATATTTGACTCATTCCTTTTCTGCTACTGGCTACCCTTACTCATCTCCCTCCTCTCTTTGAAGTTTCTCCCTCCTTAATTTGTGGTTTGGAGTCTAGAAGTGTCTGAATGGAGGAGTTGAAACCAGTTCATGGGAATCCTCCTGGGAATTAATTTATCTTAGACAAGGACAGGAGTTAGGTAAAGAATTTGAAGAATGTTGTTTTTTGGGTGCTAGATCAAAACTGTCAGAAATGGCTCAAATGGGGAATTAAAGTAAGACTTGCCTGGGGCCAGATTCTGTTTGCTATTACAAGTGAAAGCAAGACAGCTCTCTCTGTCTCACACACACACACACACACACAAATACATACACACACAGAATTGTTGTTGTTGTTGTTGTTAATGGAAGACATTCTCGCCAGAAAAGGGCTCTTGAAAATTTTGGAATATCTCTCATTTCCATCCTCTACCACACCATCACTATTTCATTATCTTTCAAAACTGGCTTTGCAAATGGGTATCCCATTTCTGTACATTTCTTCTGCAAGAATCATGGGTAGTAAAGGAGTAGATTTGATAAGAGATATTGCTATATGGCCTGGTGATGGAAAGAGAGGGAAAAATGAATGTGTAGATGGGTTAGATGCAGGAAATGTCAAGACCAGCAAAGAAGAAATTTGAGTGGATACATAAGAGAAATTTAAAAGTAGTAATTATTGACTAGACATTATTGAATGAAGCAGAAATTCCCAATTCAAAGGGACTTCTATTTTGTTTCTGCTTATATCTTCCCTAAATTTTATGAAAGAAAAAGAATTTCATTCTCAGTACAGGTGTAGTTAAATGCTAGGTGAATATTGCTTAATTGGATAACCTACTGGAGTATTTAATGGGGCTGCACAATCATGAAATTATGTGTGAATCAGCAGTGAGTAATTGAGTAAGTTTGGTGTGTGTTTGCCCGATAGTGGTTAAGGTAATTTCCTTATCAATTACATATAATTTATGCCAGTTGACTTTCAAAAATATATATCTGAGGAATGTCAGGTTTGCTTTTGTGCATGCTCTGTTTTTAGCATGAGAACAGATTTTCCATTAGAATATGTCAAAAGAGAAAATTCACCTATCAGGAGTTTGGGGAATTAGCAGTATTTGTTAATATTACTCATTTAAAGAGCATGCAGTTTTAAGAGATAGAAAGCATAATTACATCCAGGGTTATATCAGTCTGCCCACACTGTAGAGCAATGACGGTCGCATTCATCTAAGTCCTACTATTTCTATGAAGAAAAATAACAGATCACAAAATGAGCAAGTCAAGTATCTTATCTCTTTGATGAATCATTGATTTGGTTATGCTGTTTGAGAGGACAGAGAAGACAAGAAGCCCTAAACTAGTCCTGAAGGCTGTTGACATGGTGGTTAGTGGCACCGCTCAGGGGATTATGTGACTGTCTTCAGAAATGTAGCTGCGTTCAGACGATCACATTTCTGAAGTGTCTACAATCAGTGTGGAAAGGGGCTTGCTTTTGCACTTTTGTGGCTCCATCAGAAATTGTCTTTTTATACTGACTTTAACGTGTGGCGTTCACAAAGCAAACATGTCTGGCCATTCTTCCGGCTGTCACTGTTTGGTGGCAAGGATGCTGCCAGGCCTGTCAGAGTGGATCCTTGTGCGATGGCTCCATGACCTCGTGAAATCCTGGGGGCCAGTCCTTGACCTCCTGGTGGGGCGATTTGTTTCCTTACTTCCCTCGTTTCCTGCTCAAGTCTGACTCCTGGCCTGCACTGCATTGCTGTTCACGCTCCTGCTGACCCTGAATCCAGGATTCTTAATGCCAGGGTCACCCACTCTACCTGTGTGCCAAGTCCTGTGTGAGGACACAGTCTGCCTGATATAATACCCGCAGTGTGTTAGCAATGAGAGTTGGTTAAGGCAAAGTCACAGCAAGTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAAATGGACAGATCTTGGCTTTGGGTTATTATGATTTCCTTTTTGACAATCTGTTCCTCTTAACTTCTGGTCCACTTTTAATCCATCCCAGTATATATTTGTCTTTGATGTTAAGGTTCTTAAGGTATTTCTCTTTTTTTTTTTCATGGAAAGGCATTTTATTTTAAATATAGCAGTGTGTACATGTCAATCCCAAATAACCAGTCTATCCTCCCGCTACCCTTTACCCCTGGTAACCGTAAGTTTGTTCTCTTAATCTGCGAGTCTATTTTTGTTTTGTAAATAAGTTCATTTATATCAATTTTTAAAGATTACACATAGAAGTGACATTGTATTATATTTGTCTTCCTCTTACTTAGTATGATCACTGGTAGCTTTAGTTGTTTTATAAAAATGCATTAAGAATCGTAAGTTTCTTTAAATAAGATATCACTTGTGTCAAAGTATAATTCCCAAAATGTTAAACACAATTCTCATATAAATAGGTACATGTCAAGATTTCATGTAGCCCAAAAGCCAGTTCAAGAAAGAAGTCTATATTTATCTCTATATCCATGCTATATCACTTCTACATCTCTACATGTAAATTTTGCTACCAGTCCTGAGTGAGATCAGATTTTCCTCTATTCATTATTTAATTTGCAGAATCAACTCATGTAAAAACTCCATCTACCCAAGATTCCTAATATGGGCAATTTTAGTCCCTGTTACTTTAGGCTAGTGGTTCTAAAACTTTGGCATACATCAGACTCACCTCAGTGATTGATGTGTGTCACCCCAGGGTGTCTGTAGATCTGGGGTGGCACCCGGAAATTTGTATTCCTAACAACCTCGCAAGCTGATGCTGCTGGCCCAGGGCTCATGCTTTAAGATTCACTGATTGAAGTAGAAGCTTTGCCCCAGGACCATGTGGGACAAGTTCAACCTCCAAAGAAGTCAGCGCATAAACTCTGATTCGCTCTCTTCTTAACCTCTTCTTTGTTTCTCCCATATCCTTTCCCGTCCCCCTCTGTACACACAAGGTCATGCACAGCCAGCCTCACTCCAAGGATGCTCCTTCTAGTCGAACATCTCAGATTGCTAATAAAGGTCAAAGTCCCAGAGTCTTCCCACAGAGAGCTGCCCTCCCTCCTAATCTATACCGTTTCTGTCAGTTATCTCAGTTTCACTGAGTCCAGTCCAGAACACCCCAAATCCTCTTATAAATTAGCATTTTATGTTTTAAAAAATTGTGAGTGGCAGGAGTCTTTTAGTAAGGGACATTTTTATACCTGTGTGGAGAACTGAAATGCAAATGACAGCCAGCTGCCACTAGGTCCTCAGCTTCATAAAGGGGAAGAAAGAGAGTTCCCAAAGGAAGTACATGTCCCAAGTTATAGAATTTATGAATGCTTAATGGAAAAATAGAAAACCTCCTGAAAATTGTATGCGAGAGTTGTTATACGAAATAAATCATTTCCAAGCAGAGCCCCTGTGGGTGTTTCCAGTGAAAACTTTGCTTCGATCTCTCACCAACGCTTTGAGTAGGAAAGGATGCTCACTTTTAGAAACAGGTGATGGGGCAGAATGTGGAGTGAGGAACAGCTCTCAGCTCATTCAAATGGAGCCATGAGGATGTGTGTGTGTCTTTCCAG
Seq C2 exon
GACCACGAAACCTCCTTCCCTAGGGCGCTCTCAGCTCAGAGACTCTCCCCACGGTGGTGCTTTCTAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980:ENSBTAT00000026616:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]