GgaINT0108953 @ galGal3
Intron Retention
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59665917-59671605:+
Coord C1 exon
chr1:59665917-59665961
Coord A exon
chr1:59665962-59671535
Coord C2 exon
chr1:59671536-59671605
Length
5574 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGCTTCTCTGCTCAATCCAGGAC
3' ss Score
7.49
Exon sequences
Seq C1 exon
GATCTACAGTCAGCAACTTCTACTACACAGAGAGTTCATTACCAG
Seq A exon
GTAAGATAACATTTGCATTTAGTAAATGAAGAACAAAGACAAGTTTAACCATGTGAATTACACTGTTTGCATTTGAATGCAGATTTAGAGGAATTTTTGATTACCATTTGCCCTCAGATGATGGAGGTTCATTCTGATTTCCTGAGATAATCTTCTTCCTTGCAAACCTTATGGAATCATCTTTAAAATTGCCTCTTGAAGCAAATGAGAGAATGTGTCCTTTAAAATAAGTGACAAAAGATGTTTCTCTGAGAGATGGAACAATAATTTTTCATATTGTATAGATGAAGTAGTAGTACCTACCACTGAGAAGAAAGGTGTACTAGCAAACCTAACCTATTAATAATTACATGTACCACAGTCATTTTCCTATAGACTAATATGATCTTCAGAGTAGTTTCCTTGATCCATCCTGGACAGAAATGTGCCCTTTGTATGTGGCAAGAACACTCTCTTTCTAGACGGCTAGTTTTTAAAATTGGGCTCTTTGTGCATTTTGCAGCTATATTGTATAGTTTATGCAATACAGAATACAGAACTTGACAGTTGGAAACATTCGAGAATATATATTACTCTCAGTAAAATATTGTGCTGCAAAATGCTTACATTGGGAGTAAAATAATTCAGACTAAATCTGCTGACTCCTGAGCTAATTTGGCATTAGCATGGAGACTTGACACAAACAATGGTCAATTGACAAAGTGCCTAGGACCACAAGACTCAAGTTGCACGGTGTTGATAGCCTTTTCCTAGATTTAACAATGTAAGTCTTGTTAGGATCAGCAGGAATGAGTTCACTGAGAAAAAATGCAAGGATCCAGCTGATGGGAACCTACTGTAGTGAAACTGCAGATGATTTCTTGGGCCTTAATGATTACCTGGGTGATACAGAATTCCAGTTTGGCAGGACTGCCTGTAATGTGCTGTATTCAGGAAGGCACTACAAGAAAATGCAAATTTGGCATGTTTTTTCTGAAGTTGCTTTCTTCAACCAGTACGTGGTTTGCTTCTGCATTTCTGTGTCCAATTTTAACCTCATAGTTTTGACATTTGTGTCAATCATTGCCCTAGGACTGAGTTTTAGAACAGCACTTGTGTCTAGTGAATTGGCTAATAAAGCAGCTTGTGTTATTCTGTACCATTCCTTATAAATTAACCTAAGTGGCTGCTGAGTGCTCCATGTGTAGGAAACTGCCTGAGGTAAAATGAGGAACTAAATCTGTGCATATGGGGAGGGACAAAATAGGGAATTAAATGTCAGAAACCAGCTTCATACTTGGCCTTAACCTCTGTAGTTATAGCAGCATAGAAATTAATTGCCTAGCCTTTTCCTTTAGTGCACATCAGTGTGAAATCCCTCACTTGCTATTAATTTTTTATGATACTGTATTTTTAATGCCCCCCCTCTGCGTTTTGTCTTCAGTACTTGTTTGTCCTGGATTCTTCAAATGCTGCTTTATTCCTAGCATATCGTTTCTATGAACTGTCTTGCTAGGTTAATTTGTGGTTTGTTCCACATTTGTTAGCATCTGTCTATAAATTACCAAAGGGGGAAAAACGGGATAAAGGGTATGAATAAGGTTCTTGAGTTGATGGAACTGTCTTATCTTGCTAATAAGGTATCATGGGTACGTTTAGGTCTCGTAGACACAATTTTGTTGTGTGATGCTTCTGCAGCTCTCAAAACATGGGGAGTCAGCAGAAATAATATCAGCAAGCCTGGGTGTAAATGAGAAAAATGATGTTAGACTTGTTCTTCGTTCTGCTTTCTTTCTCTATCAAGTTTAATGTATATGAAATATTCTCATGGGTCTGAGACCTGCCAAGCTAGTTCTGCGGTTGAACTATAATGGGTTCTTGGAAAGAGCCTATGCAATTTGTGACTTGATTTTGTATTTGCCAGCATTATCCCTATCTTCCTTTTCCCAGCATTATGTACTCTGTCAGGTCTAGAACTTTCACTCACTTCTCCTCTTTGCATCATCTGCCGTTTTTGTATGCATTCTTATCTTTCTTTGCTTTCCTCCCTTTGTCCTTTGTATCCCAGCCCTAACCTTTCCTCAGACAGTGGGCTAAATGTTGATACTTACAGCTTTGTGCATTTAGATAAATAGAAATTAGCAAATGTAGCAGATTTTAGAAAGTTCTTTACTATTCCACGTGCACCGCAATTATGATACAAGTAAACCTAAGCATCTCACAACTCCATAAACTCATGTTAGTGAAGGAAATAGGTACATTTCAAATCTGTTATTTTAACCACCAATATACATTTTTGATAACTATTTATAGAAATAGCTCATGTTGTGGAATGTTATTCTGTCTTGCACATAAATTGGAGACAAAATCTGTACAGGAGGACAAGGTTTGTGGGATTAAGCAAAATCACTGAGTCTAAATATGAGAGGGAACTGAGATTTGATTTTTGTCAGGCTGGCTACAGATGCAGGTATCATGGATCAGGAGAGATTTTGTTTTTATAAAAGGAAAATATGTAAGTGACTGCAGTAACATTTCAGACAAGATTCATTGCCAGCACTCCAAAATCTAGGGCAATGAGAAGATGACACATGAGTTGCCCGGAGCTATCTTTGCTTTTCTGTCCAGTATAACTGGAAAGGAAAAGCAATAATAGCAAGTTCCATTCAATTGCGGTAGAAGAAACTAATAGGATGAATCATGAAAAACTGTCATGGTATAAAATACAGTTGTTCAGATTTCACAGTGGCATCTTGCCAGGCATTGAGATGTATTCACCTGGCTGTGCAAAATGAATATCCATCAAAATGTGAAGTGCTAATTGTCATCACAGCTGCTTGAAAATGACAGGTAGTGCATGCAAGCACCCAGCTGACCAGGAATTTAGGGAAACCAAGAACTTGTGTGTTTCTGTACAACAGCAGCATGGCCTCATTTTTTTCTCAAAGAGCTGAAAAAATGTTAGATACTATTATGTTAATTGAAGAGTGAGGTCTGTTTCTTGACATATGAGGGTATTATTTAGTATTTAATCATTTTGGAAATTATTTTATCCACCCAGACTGAAAGACAACTTCCTCCAACATTCTCTGAGATTTTTTCCCCAGTAGAAGAAAGCAACTTGCTTCTTCCTCACAGTCCTACTGACACATCTGGGCAGCCTAAGAAGTTGAATCAAAGAAGCATCCATTTTTCTGTGGATATATTCCTTATTTCTTAATTTTTTTTTTCTCACACGTGGCTATCTGGATAAGAAGTGTTTTAGAAATATGTCAGATTTGCAAAACATTAAGATAAATTGATGAGAAATAACTGCCCCTTCTAGGTTTTCTTAGTGATATAGACAACAGGCAGCAAAGGCAGAAGAAAATATAGAAAACTTTAAAGCTTTGAGATTCTGTATGAATGTTCCAGATGTGTTAGATGTGCATGATGCACCATAAGCTGTCATTTTAACTCTCTGCAGGTGTTTCTGCACTTTTATTCTTCTTGTACACAAACCGTGGACATGATGGAAACAGCCTGAGGGACTGGTCGGCTTTGTGTCACTTGGAGTCTGTCACTTAGAATCATAGAATCACAAGGTTGGAAAGGACCTATAAGATCATCTAGTCCAACTGTCCTCCCATTAGCCTTGCTACCACAAGCCACTAAACCTTATCTCGTAGCTTCTCATCCAGACCCCTCTTGAACACTGCCAGGGACAGCGACTCCACCACCTCCCTGGGCAGGCCATTCCAGTGCCTGACCACTCTCTGAGAAAAGTTTTTCCTTATGTCTAAACTAAATCTCCCCTGGCACAACTTGTGGCCATTTCCTCGGGTCCCTGTTTATTGCCTGGGAGAAGAGGCCAAACCCCTCCTCGTCACAGCCTTCCTTCAGGAAGCTGTAGAGTGCAACTGATTGTCTCCTCTGAGCCTCCTCTTTTCCAGACTGAACAATCCCAGCTCCCTCAGCCGCTCCTCATAAGACTTGTGCTTCAGACCCCTCACCAGGTTCGGTGCCCTTCTCTGGACACATTCTAGGGCCTCAATGTCTTTCTTGTAGTGAGGGGCCTAGATGGGCTAGATGCCTTTCTAAAAGATCTGCTGTAGTGCAGGCTGGAGAAATGACTTTGAAGCACAAGCTGGAGGACAGATTTCTGTATTATGCTAGACATTAACTGTTTGTAGCCCTGTCGTTCCTCTCGGTTGAAAACCCATGATTGACTGAAATCTGTTTTTGGAACTTGCTCCTTCAGTCAATCTTTACTTTCTGATGCTGGACTCTCAAACCCCTACTCACCAGACAGAGCTGTACAATTCCCAGTGCAGGTGTTTTTTTTTGTTGTTGTTGTTTTGTTTTAATCTTGCATCCTGCAGTCAGGAAAGGTGGTGGGCATCTGTATAATATTCAGACAAGTTCCAGTAAGGTACTGTTGTATGTTTGTTTTCACCACTCTGTGCCCATGTTATGAATATATGTACTTACGCCTTATCAAATACTGTGCTTTCTGTGCAGAGCAGTACTTTTCTCAAAGGTACCTTCCCTCCCCACTGCTTCTGCTTTCTCATTTTCTCACCTTGTGCATTGATATAGCCCTTCATAGTCTGTTGTCTTAAGGAGAAGTAAATCTTAATCTTGAGTGAATGTGTGCCTGAATTTACGTCATTTGCAGGTGCGCTGATTTTACTGCGTAAGTTATAAATAAGGATAGAATTTGGCTCTATGCACATTTTGGGTTGGTGCCCACAGGCTGTGCTGTTGTGCTTTGTCCTATGCAAATCTATTTGTGTTTAGGTGTTGTGTTCCAGCAGCTTTAGGAATCTGGCTGGCCATCCACTGGCAGCATGGCACAGAGCCACGACCACCTCTGCTTTCTGAGATCCCTCTTGTCTCCATCTCAGTGAGAGCTAAGAAAACAAGAAACACCCTTTGTTCTTCCCCAGCCATTTGGTTCCTTGATGTAATATCAGTTGGGCCCCAACAAGCGGGTCTTTCTAGACAGAATGGGAACACGTTGATATGGGATGTCTGATACCTTAGCCAGCAATGATCCCCAGGTCTGCACCCTGCACTGTCTGTATTCTGGATGAAGACAGCAGCTTCTTTTTTTTTTTTTTTTTCTCCCCTTTTTTCTTCTTATTTTTAAATCTGATGTGCATTTGGGACATGCCAGGGACAGCAATAAGGGCACTTGTTCTAAGTGGCAGACTGATGGAGGTGGGAAGGGCTGTAAAGCCCTACTCTGGAGTAAGAGAAAGTAAAAGGTACACAAACAGTAATTGGAGTTCATTGCTTGTTGTTTGTTTTTGATCTTCTCTTTCTCCTCTCCCTATTTTTCTACCCCAACAAACAATCATGACTTCAGACATCCAAGAAAGCTGCTTCTGATGCAGTGCTTTCTGATGTTGCTGAGGTGAAGGAGAAAGTACAGCTGAGAGTGTGCCTCAGGTTTACTTACAGAGAGTAAATTGTTTGCTATATTACAATAAAAACCTGATGTGAGTGGGGAGCAAACCGAGTGGGTTTAGGTTTTGCAGGTTTTGCACACTGTGCAATATAGTGGAAAAAAACCCATTTTTTAAAAAAATGTTGCTTCTCTGCTCAATCCAG
Seq C2 exon
GACCAAGAAAGCTCTTTCCCAAGAGTACTTTCTGTTCAGAGGCTCTCTCCTAGATGGTGCTTCCTAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890:ENSGALT00000021020:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]