BtaINT0048706 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77241933-77242191:+
Coord C1 exon
chr15:77241933-77242015
Coord A exon
chr15:77242016-77242130
Coord C2 exon
chr15:77242131-77242191
Length
115 bp
Sequences
Splice sites
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
3' ss Seq
TTCCCACCCTCTGACCCCAGGCT
3' ss Score
8.19
Exon sequences
Seq C1 exon
GGCGCCAAGATCATCCAGTCCTTCCTCTGGTATCTGAATCCCCGGCAAGTCTTTGACCTGAGCCAGGGGGGCCCCAGGGAGGC
Seq A exon
GTAAGTACCTGCCAGGGCTCTGTGGGGGCGGTGGCGAGAGCTGGCCTGGCGCGCTCTCTGGGCACAGCTCACGGGTCCTGACCCCTCTGACCCCGTTCCCACCCTCTGACCCCAG
Seq C2 exon
GCTGGAGATGTATCGCCGAGTGCACAACCTGCGGATCCTGGCCTGCGGGGGTGACGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636:ENSBTAT00000018128:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(21.6=100)
A:
NA
C2:
PF0078119=DAGK_cat=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGCCAAGATCATCCAGTC
R:
GCACTCGGCGATACATCTCCA
Band lengths:
106-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development