RnoINT0047093 @ rn6
Intron Retention
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80850934-80851173:-
Coord C1 exon
chr3:80851091-80851173
Coord A exon
chr3:80850995-80851090
Coord C2 exon
chr3:80850934-80850994
Length
96 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
ACCTGTCTTCCCCGGCCCAGGCT
3' ss Score
6.85
Exon sequences
Seq C1 exon
GGCGCTAAGATCATCCAGTCTTTTCTGTGGTATCTGAACCCCCGGCAAGTCTTCGATCTGAGCCAGGGAGGACCCAGGGAAGC
Seq A exon
GTGAGTGCTCGCCGGATTCTCTGGGGGGACAGGGGGCTACAAGGCTCTGATTGTGGCGCATGTCTCCTGACTCTCTACCTGTCTTCCCCGGCCCAG
Seq C2 exon
GCTGGAAATGTACCGCAAAGTCCATAATTTGAGGATTCTGGCTTGCGGGGGTGATGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737:ENSRNOT00000024280:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(21.6=100)
A:
NA
C2:
PF0078119=DAGK_cat=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGCTAAGATCATCCAGTCT
R:
ACCCCCGCAAGCCAGAATC
Band lengths:
135-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]